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ZNF587 (zinc finger protein 587)

Identity

Alias_symbol (synonym)ZF6
FLJ14710
UBF-fl
FLJ20813
Other alias
HGNC (Hugo) ZNF587
LocusID (NCBI) 84914
Atlas_Id 76265
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57849813 and ends at 57865123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RGS12 (4p16.3) / ZNF587 (19q13.43)THBS1 (15q14) / ZNF587 (19q13.43)ZNF587 (19q13.43) / EML4 (2p21)
ZNF587 (19q13.43) / PARN (16p13.12)ZNF587 (19q13.43) / PHACTR2 (6q24.2)ZNF587 (19q13.43) / SRC (20q11.23)
ZNF587 (19q13.43) / TMEM150B (19q13.42)ZNF587 (19q13.43) / ZSCAN4 (19q13.43)ZNF587 SRC
ZNF587 TMEM150B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF587   30955
Cards
Entrez_Gene (NCBI)ZNF587  84914  zinc finger protein 587
AliasesZF6
GeneCards (Weizmann)ZNF587
Ensembl hg19 (Hinxton)ENSG00000198466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198466 [Gene_View]  chr19:57849813-57865123 [Contig_View]  ZNF587 [Vega]
ICGC DataPortalENSG00000198466
TCGA cBioPortalZNF587
AceView (NCBI)ZNF587
Genatlas (Paris)ZNF587
WikiGenes84914
SOURCE (Princeton)ZNF587
Genetics Home Reference (NIH)ZNF587
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF587  -     chr19:57849813-57865123 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF587  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF587 - 19q13.43 [CytoView hg19]  ZNF587 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF587 [Mapview hg19]  ZNF587 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA524202 AF294842 AK000820 AK026676 AK027616
RefSeq transcript (Entrez)NM_001204817 NM_032828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF587
Cluster EST : UnigeneHs.744891 [ NCBI ]
CGAP (NCI)Hs.744891
Alternative Splicing GalleryENSG00000198466
Gene ExpressionZNF587 [ NCBI-GEO ]   ZNF587 [ EBI - ARRAY_EXPRESS ]   ZNF587 [ SEEK ]   ZNF587 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF587 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84914
GTEX Portal (Tissue expression)ZNF587
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SQ5
Splice isoforms : SwissVarQ96SQ5
PhosPhoSitePlusQ96SQ5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF587
DMDM Disease mutations84914
Blocks (Seattle)ZNF587
SuperfamilyQ96SQ5
Human Protein AtlasENSG00000198466
Peptide AtlasQ96SQ5
HPRD15864
IPIIPI00939353   
Protein Interaction databases
DIP (DOE-UCLA)Q96SQ5
IntAct (EBI)Q96SQ5
FunCoupENSG00000198466
BioGRIDZNF587
STRING (EMBL)ZNF587
ZODIACZNF587
Ontologies - Pathways
QuickGOQ96SQ5
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF587
Atlas of Cancer Signalling NetworkZNF587
Wikipedia pathwaysZNF587
Orthology - Evolution
OrthoDB84914
GeneTree (enSembl)ENSG00000198466
Phylogenetic Trees/Animal Genes : TreeFamZNF587
HOVERGENQ96SQ5
HOGENOMQ96SQ5
Homologs : HomoloGeneZNF587
Homology/Alignments : Family Browser (UCSC)ZNF587
Gene fusions - Rearrangements
Fusion: TCGAZNF587 SRC
Fusion: TCGAZNF587 TMEM150B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF587 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF587
dbVarZNF587
ClinVarZNF587
1000_GenomesZNF587 
Exome Variant ServerZNF587
ExAC (Exome Aggregation Consortium)ZNF587 (select the gene name)
Genetic variants : HAPMAP84914
Genomic Variants (DGV)ZNF587 [DGVbeta]
DECIPHERZNF587 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF587 
Mutations
ICGC Data PortalZNF587 
TCGA Data PortalZNF587 
Broad Tumor PortalZNF587
OASIS PortalZNF587 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF587  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF587
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF587
DgiDB (Drug Gene Interaction Database)ZNF587
DoCM (Curated mutations)ZNF587 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF587 (select a term)
intoGenZNF587
Cancer3DZNF587(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF587
Genetic Testing Registry ZNF587
NextProtQ96SQ5 [Medical]
TSGene84914
GENETestsZNF587
Target ValidationZNF587
Huge Navigator ZNF587 [HugePedia]
snp3D : Map Gene to Disease84914
BioCentury BCIQZNF587
ClinGenZNF587
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84914
Chemical/Pharm GKB GenePA134940421
Clinical trialZNF587
Miscellaneous
canSAR (ICR)ZNF587 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF587
EVEXZNF587
GoPubMedZNF587
iHOPZNF587
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:01 CEST 2017

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