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ZNF587B (zinc finger protein 587B)

Identity

Other alias-
HGNC (Hugo) ZNF587B
LocusID (NCBI) 100293516
Atlas_Id 76266
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57830294 and ends at 57846238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF587B   37142
Cards
Entrez_Gene (NCBI)ZNF587B  100293516  zinc finger protein 587B
Aliases
GeneCards (Weizmann)ZNF587B
Ensembl hg19 (Hinxton)ENSG00000269343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269343 [Gene_View]  chr19:57830294-57846238 [Contig_View]  ZNF587B [Vega]
ICGC DataPortalENSG00000269343
TCGA cBioPortalZNF587B
AceView (NCBI)ZNF587B
Genatlas (Paris)ZNF587B
WikiGenes100293516
SOURCE (Princeton)ZNF587B
Genetics Home Reference (NIH)ZNF587B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF587B  -     chr19:57830294-57846238 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF587B  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF587B - 19q13.43 [CytoView hg19]  ZNF587B - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF587B [Mapview hg19]  ZNF587B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK299091 CA427231 DB065500 U71363
RefSeq transcript (Entrez)NM_001204818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF587B
Cluster EST : UnigeneHs.744891 [ NCBI ]
CGAP (NCI)Hs.744891
Alternative Splicing GalleryENSG00000269343
Gene ExpressionZNF587B [ NCBI-GEO ]   ZNF587B [ EBI - ARRAY_EXPRESS ]   ZNF587B [ SEEK ]   ZNF587B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF587B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100293516
GTEX Portal (Tissue expression)ZNF587B
Human Protein AtlasENSG00000269343-ZNF587B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE7ETH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE7ETH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE7ETH6
Splice isoforms : SwissVarE7ETH6
PhosPhoSitePlusE7ETH6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF587B
DMDM Disease mutations100293516
Blocks (Seattle)ZNF587B
SuperfamilyE7ETH6
Human Protein Atlas [tissue]ENSG00000269343-ZNF587B [tissue]
Peptide AtlasE7ETH6
Protein Interaction databases
DIP (DOE-UCLA)E7ETH6
IntAct (EBI)E7ETH6
FunCoupENSG00000269343
BioGRIDZNF587B
STRING (EMBL)ZNF587B
ZODIACZNF587B
Ontologies - Pathways
QuickGOE7ETH6
Ontology : AmiGOnucleic acid binding  nucleus  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF587B
Atlas of Cancer Signalling NetworkZNF587B
Wikipedia pathwaysZNF587B
Orthology - Evolution
OrthoDB100293516
GeneTree (enSembl)ENSG00000269343
Phylogenetic Trees/Animal Genes : TreeFamZNF587B
HOVERGENE7ETH6
HOGENOME7ETH6
Homologs : HomoloGeneZNF587B
Homology/Alignments : Family Browser (UCSC)ZNF587B
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF587B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF587B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF587B
dbVarZNF587B
ClinVarZNF587B
1000_GenomesZNF587B 
Exome Variant ServerZNF587B
ExAC (Exome Aggregation Consortium)ENSG00000269343
GNOMAD BrowserENSG00000269343
Genetic variants : HAPMAP100293516
Genomic Variants (DGV)ZNF587B [DGVbeta]
DECIPHERZNF587B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF587B 
Mutations
ICGC Data PortalZNF587B 
TCGA Data PortalZNF587B 
Broad Tumor PortalZNF587B
OASIS PortalZNF587B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF587B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF587B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF587B
DgiDB (Drug Gene Interaction Database)ZNF587B
DoCM (Curated mutations)ZNF587B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF587B (select a term)
intoGenZNF587B
Cancer3DZNF587B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF587B
Genetic Testing Registry ZNF587B
NextProtE7ETH6 [Medical]
TSGene100293516
GENETestsZNF587B
Target ValidationZNF587B
Huge Navigator ZNF587B [HugePedia]
snp3D : Map Gene to Disease100293516
BioCentury BCIQZNF587B
ClinGenZNF587B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100293516
Chemical/Pharm GKB GenePA166049021
Clinical trialZNF587B
Miscellaneous
canSAR (ICR)ZNF587B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF587B
EVEXZNF587B
GoPubMedZNF587B
iHOPZNF587B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:29 CET 2017

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