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ZNF589 (zinc finger protein 589)

Identity

Alias_symbol (synonym)SZF1
Other alias
HGNC (Hugo) ZNF589
LocusID (NCBI) 51385
Atlas_Id 76267
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48241106 and ends at 48270989 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL4A6 (Xq22.3) / ZNF589 (3p21.31)DAG1 (3p21.31) / ZNF589 (3p21.31)ZNF589 (3p21.31) / ALS2CL (3p21.31)
ZNF589 (3p21.31) / CAMP (3p21.31)ZNF589 CAMPZNF589 ALS2CL

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF589   16747
Cards
Entrez_Gene (NCBI)ZNF589  51385  zinc finger protein 589
AliasesSZF1
GeneCards (Weizmann)ZNF589
Ensembl hg19 (Hinxton)ENSG00000164048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164048 [Gene_View]  chr3:48241106-48270989 [Contig_View]  ZNF589 [Vega]
ICGC DataPortalENSG00000164048
TCGA cBioPortalZNF589
AceView (NCBI)ZNF589
Genatlas (Paris)ZNF589
WikiGenes51385
SOURCE (Princeton)ZNF589
Genetics Home Reference (NIH)ZNF589
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF589  -     chr3:48241106-48270989 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF589  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF589 - 3p21.31 [CytoView hg19]  ZNF589 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF589 [Mapview hg19]  ZNF589 [Mapview hg38]
OMIM616702   
Gene and transcription
Genbank (Entrez)AB209387 AF114816 AF114817 AK298782 AL832831
RefSeq transcript (Entrez)NM_016089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF589
Cluster EST : UnigeneHs.172602 [ NCBI ]
CGAP (NCI)Hs.172602
Alternative Splicing GalleryENSG00000164048
Gene ExpressionZNF589 [ NCBI-GEO ]   ZNF589 [ EBI - ARRAY_EXPRESS ]   ZNF589 [ SEEK ]   ZNF589 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF589 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51385
GTEX Portal (Tissue expression)ZNF589
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UQ0
Splice isoforms : SwissVarQ86UQ0
PhosPhoSitePlusQ86UQ0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF589
DMDM Disease mutations51385
Blocks (Seattle)ZNF589
SuperfamilyQ86UQ0
Human Protein AtlasENSG00000164048
Peptide AtlasQ86UQ0
HPRD15865
IPIIPI00419995   IPI00939162   IPI00300073   IPI00908310   IPI00788856   IPI00925560   IPI00925247   
Protein Interaction databases
DIP (DOE-UCLA)Q86UQ0
IntAct (EBI)Q86UQ0
FunCoupENSG00000164048
BioGRIDZNF589
STRING (EMBL)ZNF589
ZODIACZNF589
Ontologies - Pathways
QuickGOQ86UQ0
Ontology : AmiGODNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF589
Atlas of Cancer Signalling NetworkZNF589
Wikipedia pathwaysZNF589
Orthology - Evolution
OrthoDB51385
GeneTree (enSembl)ENSG00000164048
Phylogenetic Trees/Animal Genes : TreeFamZNF589
HOVERGENQ86UQ0
HOGENOMQ86UQ0
Homologs : HomoloGeneZNF589
Homology/Alignments : Family Browser (UCSC)ZNF589
Gene fusions - Rearrangements
Fusion: TCGAZNF589 CAMP
Fusion: TCGAZNF589 ALS2CL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF589 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF589
dbVarZNF589
ClinVarZNF589
1000_GenomesZNF589 
Exome Variant ServerZNF589
ExAC (Exome Aggregation Consortium)ZNF589 (select the gene name)
Genetic variants : HAPMAP51385
Genomic Variants (DGV)ZNF589 [DGVbeta]
DECIPHERZNF589 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF589 
Mutations
ICGC Data PortalZNF589 
TCGA Data PortalZNF589 
Broad Tumor PortalZNF589
OASIS PortalZNF589 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF589  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF589
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF589
DgiDB (Drug Gene Interaction Database)ZNF589
DoCM (Curated mutations)ZNF589 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF589 (select a term)
intoGenZNF589
Cancer3DZNF589(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616702   
Orphanet
MedgenZNF589
Genetic Testing Registry ZNF589
NextProtQ86UQ0 [Medical]
TSGene51385
GENETestsZNF589
Target ValidationZNF589
Huge Navigator ZNF589 [HugePedia]
snp3D : Map Gene to Disease51385
BioCentury BCIQZNF589
ClinGenZNF589
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51385
Chemical/Pharm GKB GenePA134988473
Clinical trialZNF589
Miscellaneous
canSAR (ICR)ZNF589 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF589
EVEXZNF589
GoPubMedZNF589
iHOPZNF589
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:01 CEST 2017

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