Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF592 (zinc finger protein 592)

Identity

Alias_namesSCAR5
spinocerebellar ataxia
Alias_symbol (synonym)KIAA0211
CAMOS
Other alias
HGNC (Hugo) ZNF592
LocusID (NCBI) 9640
Atlas_Id 51316
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 85291818 and ends at 85349663 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WDR88 (19q13.11) / ZNF592 (15q25.3)ZNF592 (15q25.3) / AUTS2 (7q11.22)ZNF592 (15q25.3) / HDAC1 (1p35.1)
ZNF592 (15q25.3) / ZNF592 (15q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF592   28986
Cards
Entrez_Gene (NCBI)ZNF592  9640  zinc finger protein 592
AliasesCAMOS; SCAR5
GeneCards (Weizmann)ZNF592
Ensembl hg19 (Hinxton)ENSG00000166716 [Gene_View]  chr15:85291818-85349663 [Contig_View]  ZNF592 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166716 [Gene_View]  chr15:85291818-85349663 [Contig_View]  ZNF592 [Vega]
ICGC DataPortalENSG00000166716
TCGA cBioPortalZNF592
AceView (NCBI)ZNF592
Genatlas (Paris)ZNF592
WikiGenes9640
SOURCE (Princeton)ZNF592
Genetics Home Reference (NIH)ZNF592
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF592  -     chr15:85291818-85349663 +  15q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF592  -     15q25.3   [Description]    (hg38-Dec_2013)
EnsemblZNF592 - 15q25.3 [CytoView hg19]  ZNF592 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBIZNF592 [Mapview hg19]  ZNF592 [Mapview hg38]
OMIM606937   613624   
Gene and transcription
Genbank (Entrez)AA835974 AK090507 BC040038 BC094688 BC112232
RefSeq transcript (Entrez)NM_014630
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_028094 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)ZNF592
Cluster EST : UnigeneHs.79347 [ NCBI ]
CGAP (NCI)Hs.79347
Alternative Splicing GalleryENSG00000166716
Gene ExpressionZNF592 [ NCBI-GEO ]   ZNF592 [ EBI - ARRAY_EXPRESS ]   ZNF592 [ SEEK ]   ZNF592 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF592 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9640
GTEX Portal (Tissue expression)ZNF592
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92610   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92610  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92610
Splice isoforms : SwissVarQ92610
PhosPhoSitePlusQ92610
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)zf-C2H2_11 (PF16622)   
Domain families : Pfam (NCBI)pfam16622   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF592
DMDM Disease mutations9640
Blocks (Seattle)ZNF592
SuperfamilyQ92610
Human Protein AtlasENSG00000166716
Peptide AtlasQ92610
HPRD10339
IPIIPI00022460   
Protein Interaction databases
DIP (DOE-UCLA)Q92610
IntAct (EBI)Q92610
FunCoupENSG00000166716
BioGRIDZNF592
STRING (EMBL)ZNF592
ZODIACZNF592
Ontologies - Pathways
QuickGOQ92610
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF592
Atlas of Cancer Signalling NetworkZNF592
Wikipedia pathwaysZNF592
Orthology - Evolution
OrthoDB9640
GeneTree (enSembl)ENSG00000166716
Phylogenetic Trees/Animal Genes : TreeFamZNF592
HOVERGENQ92610
HOGENOMQ92610
Homologs : HomoloGeneZNF592
Homology/Alignments : Family Browser (UCSC)ZNF592
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF592 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF592
dbVarZNF592
ClinVarZNF592
1000_GenomesZNF592 
Exome Variant ServerZNF592
ExAC (Exome Aggregation Consortium)ZNF592 (select the gene name)
Genetic variants : HAPMAP9640
Genomic Variants (DGV)ZNF592 [DGVbeta]
DECIPHER (Syndromes)15:85291818-85349663  ENSG00000166716
CONAN: Copy Number AnalysisZNF592 
Mutations
ICGC Data PortalZNF592 
TCGA Data PortalZNF592 
Broad Tumor PortalZNF592
OASIS PortalZNF592 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF592  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF592
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF592
DgiDB (Drug Gene Interaction Database)ZNF592
DoCM (Curated mutations)ZNF592 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF592 (select a term)
intoGenZNF592
Cancer3DZNF592(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606937    613624   
Orphanet11581   
MedgenZNF592
Genetic Testing Registry ZNF592
NextProtQ92610 [Medical]
TSGene9640
GENETestsZNF592
Huge Navigator ZNF592 [HugePedia]
snp3D : Map Gene to Disease9640
BioCentury BCIQZNF592
ClinGenZNF592
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9640
Chemical/Pharm GKB GenePA134918837
Clinical trialZNF592
Miscellaneous
canSAR (ICR)ZNF592 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF592
EVEXZNF592
GoPubMedZNF592
iHOPZNF592
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:35:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.