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ZNF593 (zinc finger protein 593)

Identity

Alias_symbol (synonym)ZT86
Other alias
HGNC (Hugo) ZNF593
LocusID (NCBI) 51042
Atlas_Id 76268
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26169897 and ends at 26170873 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRA2 (8p11.23) / ZNF593 (1p36.11)ZNF593 (1p36.11) / UBE2A (Xq24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF593   30943
Cards
Entrez_Gene (NCBI)ZNF593  51042  zinc finger protein 593
AliasesZT86
GeneCards (Weizmann)ZNF593
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:26169897-26170873 [Contig_View]  ZNF593 [Vega]
TCGA cBioPortalZNF593
AceView (NCBI)ZNF593
Genatlas (Paris)ZNF593
WikiGenes51042
SOURCE (Princeton)ZNF593
Genetics Home Reference (NIH)ZNF593
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF593  -     chr1:26169897-26170873 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF593  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblZNF593 - 1p36.11 [CytoView hg19]  ZNF593 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIZNF593 [Mapview hg19]  ZNF593 [Mapview hg38]
OMIM616698   
Gene and transcription
Genbank (Entrez)AI083892 AK311926 BC002580 BC019267 D45213
RefSeq transcript (Entrez)NM_015871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF593
Cluster EST : UnigeneHs.477273 [ NCBI ]
CGAP (NCI)Hs.477273
Gene ExpressionZNF593 [ NCBI-GEO ]   ZNF593 [ EBI - ARRAY_EXPRESS ]   ZNF593 [ SEEK ]   ZNF593 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF593 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51042
GTEX Portal (Tissue expression)ZNF593
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00488   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00488  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00488
Splice isoforms : SwissVarO00488
PhosPhoSitePlusO00488
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF593
DMDM Disease mutations51042
Blocks (Seattle)ZNF593
PDB (SRS)1ZR9   
PDB (PDBSum)1ZR9   
PDB (IMB)1ZR9   
PDB (RSDB)1ZR9   
Structural Biology KnowledgeBase1ZR9   
SCOP (Structural Classification of Proteins)1ZR9   
CATH (Classification of proteins structures)1ZR9   
SuperfamilyO00488
Peptide AtlasO00488
HPRD15866
IPIIPI00844193   IPI00878508   
Protein Interaction databases
DIP (DOE-UCLA)O00488
IntAct (EBI)O00488
BioGRIDZNF593
STRING (EMBL)ZNF593
ZODIACZNF593
Ontologies - Pathways
QuickGOO00488
Ontology : AmiGOacyl binding  ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process  ribosomal large subunit export from nucleus  DNA binding  protein binding  nucleus  nucleolus  cytosol  transcription, DNA-templated  zinc ion binding  lipid A biosynthetic process  preribosome, large subunit precursor  phosphopantetheine binding  ribosomal large subunit binding  positive regulation of transcription from RNA polymerase II promoter  negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding  
Ontology : EGO-EBIacyl binding  ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process  ribosomal large subunit export from nucleus  DNA binding  protein binding  nucleus  nucleolus  cytosol  transcription, DNA-templated  zinc ion binding  lipid A biosynthetic process  preribosome, large subunit precursor  phosphopantetheine binding  ribosomal large subunit binding  positive regulation of transcription from RNA polymerase II promoter  negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding  
NDEx NetworkZNF593
Atlas of Cancer Signalling NetworkZNF593
Wikipedia pathwaysZNF593
Orthology - Evolution
OrthoDB51042
Phylogenetic Trees/Animal Genes : TreeFamZNF593
HOVERGENO00488
HOGENOMO00488
Homologs : HomoloGeneZNF593
Homology/Alignments : Family Browser (UCSC)ZNF593
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF593 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF593
dbVarZNF593
ClinVarZNF593
1000_GenomesZNF593 
Exome Variant ServerZNF593
ExAC (Exome Aggregation Consortium)ZNF593 (select the gene name)
Genetic variants : HAPMAP51042
Genomic Variants (DGV)ZNF593 [DGVbeta]
DECIPHERZNF593 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF593 
Mutations
ICGC Data PortalZNF593 
TCGA Data PortalZNF593 
Broad Tumor PortalZNF593
OASIS PortalZNF593 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF593  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF593
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF593
DgiDB (Drug Gene Interaction Database)ZNF593
DoCM (Curated mutations)ZNF593 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF593 (select a term)
intoGenZNF593
Cancer3DZNF593(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616698   
Orphanet
MedgenZNF593
Genetic Testing Registry ZNF593
NextProtO00488 [Medical]
TSGene51042
GENETestsZNF593
Target ValidationZNF593
Huge Navigator ZNF593 [HugePedia]
snp3D : Map Gene to Disease51042
BioCentury BCIQZNF593
ClinGenZNF593
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51042
Chemical/Pharm GKB GenePA134962156
Clinical trialZNF593
Miscellaneous
canSAR (ICR)ZNF593 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF593
EVEXZNF593
GoPubMedZNF593
iHOPZNF593
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:50 CEST 2017

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