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ZNF596 (zinc finger protein 596)

Identity

Other alias-
HGNC (Hugo) ZNF596
LocusID (NCBI) 169270
Atlas_Id 76270
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 232460 and ends at 247340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM52 (5q35.3) / ZNF596 (8p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF596   27268
Cards
Entrez_Gene (NCBI)ZNF596  169270  zinc finger protein 596
Aliases
GeneCards (Weizmann)ZNF596
Ensembl hg19 (Hinxton)ENSG00000172748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172748 [Gene_View]  chr8:232460-247340 [Contig_View]  ZNF596 [Vega]
ICGC DataPortalENSG00000172748
TCGA cBioPortalZNF596
AceView (NCBI)ZNF596
Genatlas (Paris)ZNF596
WikiGenes169270
SOURCE (Princeton)ZNF596
Genetics Home Reference (NIH)ZNF596
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF596  -     chr8:232460-247340 +  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF596  -     8p23.3   [Description]    (hg19-Feb_2009)
EnsemblZNF596 - 8p23.3 [CytoView hg19]  ZNF596 - 8p23.3 [CytoView hg38]
Mapping of homologs : NCBIZNF596 [Mapview hg19]  ZNF596 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK313454 BC026190 BG771504 BM478564 CR747438
RefSeq transcript (Entrez)NM_001042415 NM_001042416 NM_001287254 NM_001287255 NM_001287256 NM_001287399 NM_173539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF596
Cluster EST : UnigeneHs.591388 [ NCBI ]
CGAP (NCI)Hs.591388
Alternative Splicing GalleryENSG00000172748
Gene ExpressionZNF596 [ NCBI-GEO ]   ZNF596 [ EBI - ARRAY_EXPRESS ]   ZNF596 [ SEEK ]   ZNF596 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF596 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169270
GTEX Portal (Tissue expression)ZNF596
Human Protein AtlasENSG00000172748-ZNF596 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC21
Splice isoforms : SwissVarQ8TC21
PhosPhoSitePlusQ8TC21
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF596
DMDM Disease mutations169270
Blocks (Seattle)ZNF596
SuperfamilyQ8TC21
Human Protein Atlas [tissue]ENSG00000172748-ZNF596 [tissue]
Peptide AtlasQ8TC21
HPRD11731
IPIIPI00176317   IPI00163775   IPI00873880   IPI00983783   IPI00980366   IPI00982415   IPI00975928   IPI00973935   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC21
IntAct (EBI)Q8TC21
FunCoupENSG00000172748
BioGRIDZNF596
STRING (EMBL)ZNF596
ZODIACZNF596
Ontologies - Pathways
QuickGOQ8TC21
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF596
Atlas of Cancer Signalling NetworkZNF596
Wikipedia pathwaysZNF596
Orthology - Evolution
OrthoDB169270
GeneTree (enSembl)ENSG00000172748
Phylogenetic Trees/Animal Genes : TreeFamZNF596
HOVERGENQ8TC21
HOGENOMQ8TC21
Homologs : HomoloGeneZNF596
Homology/Alignments : Family Browser (UCSC)ZNF596
Gene fusions - Rearrangements
Tumor Fusion PortalZNF596
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF596 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF596
dbVarZNF596
ClinVarZNF596
1000_GenomesZNF596 
Exome Variant ServerZNF596
ExAC (Exome Aggregation Consortium)ENSG00000172748
GNOMAD BrowserENSG00000172748
Genetic variants : HAPMAP169270
Genomic Variants (DGV)ZNF596 [DGVbeta]
DECIPHERZNF596 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF596 
Mutations
ICGC Data PortalZNF596 
TCGA Data PortalZNF596 
Broad Tumor PortalZNF596
OASIS PortalZNF596 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF596  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF596
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF596
DgiDB (Drug Gene Interaction Database)ZNF596
DoCM (Curated mutations)ZNF596 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF596 (select a term)
intoGenZNF596
Cancer3DZNF596(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF596
MedgenZNF596
Genetic Testing Registry ZNF596
NextProtQ8TC21 [Medical]
TSGene169270
GENETestsZNF596
Target ValidationZNF596
Huge Navigator ZNF596 [HugePedia]
snp3D : Map Gene to Disease169270
BioCentury BCIQZNF596
ClinGenZNF596
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169270
Chemical/Pharm GKB GenePA134901402
Clinical trialZNF596
Miscellaneous
canSAR (ICR)ZNF596 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF596
EVEXZNF596
GoPubMedZNF596
iHOPZNF596
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:14 CET 2017

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