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ZNF597 (zinc finger protein 597)

Identity

Alias_symbol (synonym)FLJ33071
HIT-4
Other alias
HGNC (Hugo) ZNF597
LocusID (NCBI) 146434
Atlas_Id 76271
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3432422 and ends at 3443537 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF597 (16p13.3) / C16orf90 (16p13.3)ZNF597 (16p13.3) / NPIPA1 (16p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF597   26573
LRG (Locus Reference Genomic)LRG_1066
Cards
Entrez_Gene (NCBI)ZNF597  146434  zinc finger protein 597
AliasesHIT-4
GeneCards (Weizmann)ZNF597
Ensembl hg19 (Hinxton)ENSG00000167981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167981 [Gene_View]  chr16:3432422-3443537 [Contig_View]  ZNF597 [Vega]
ICGC DataPortalENSG00000167981
TCGA cBioPortalZNF597
AceView (NCBI)ZNF597
Genatlas (Paris)ZNF597
WikiGenes146434
SOURCE (Princeton)ZNF597
Genetics Home Reference (NIH)ZNF597
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF597  -     chr16:3432422-3443537 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF597  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF597 - 16p13.3 [CytoView hg19]  ZNF597 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF597 [Mapview hg19]  ZNF597 [Mapview hg38]
OMIM614685   
Gene and transcription
Genbank (Entrez)AI038687 AK057633 AL701654 BC029899 EU446575
RefSeq transcript (Entrez)NM_152457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF597
Cluster EST : UnigeneHs.133338 [ NCBI ]
CGAP (NCI)Hs.133338
Alternative Splicing GalleryENSG00000167981
Gene ExpressionZNF597 [ NCBI-GEO ]   ZNF597 [ EBI - ARRAY_EXPRESS ]   ZNF597 [ SEEK ]   ZNF597 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF597 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146434
GTEX Portal (Tissue expression)ZNF597
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LX8
Splice isoforms : SwissVarQ96LX8
PhosPhoSitePlusQ96LX8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF597
DMDM Disease mutations146434
Blocks (Seattle)ZNF597
SuperfamilyQ96LX8
Human Protein AtlasENSG00000167981
Peptide AtlasQ96LX8
HPRD15869
IPIIPI00065390   
Protein Interaction databases
DIP (DOE-UCLA)Q96LX8
IntAct (EBI)Q96LX8
FunCoupENSG00000167981
BioGRIDZNF597
STRING (EMBL)ZNF597
ZODIACZNF597
Ontologies - Pathways
QuickGOQ96LX8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF597
Atlas of Cancer Signalling NetworkZNF597
Wikipedia pathwaysZNF597
Orthology - Evolution
OrthoDB146434
GeneTree (enSembl)ENSG00000167981
Phylogenetic Trees/Animal Genes : TreeFamZNF597
HOVERGENQ96LX8
HOGENOMQ96LX8
Homologs : HomoloGeneZNF597
Homology/Alignments : Family Browser (UCSC)ZNF597
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF597 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF597
dbVarZNF597
ClinVarZNF597
1000_GenomesZNF597 
Exome Variant ServerZNF597
ExAC (Exome Aggregation Consortium)ZNF597 (select the gene name)
Genetic variants : HAPMAP146434
Genomic Variants (DGV)ZNF597 [DGVbeta]
DECIPHERZNF597 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF597 
Mutations
ICGC Data PortalZNF597 
TCGA Data PortalZNF597 
Broad Tumor PortalZNF597
OASIS PortalZNF597 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF597  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF597
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF597
DgiDB (Drug Gene Interaction Database)ZNF597
DoCM (Curated mutations)ZNF597 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF597 (select a term)
intoGenZNF597
Cancer3DZNF597(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614685   
Orphanet
MedgenZNF597
Genetic Testing Registry ZNF597
NextProtQ96LX8 [Medical]
TSGene146434
GENETestsZNF597
Target ValidationZNF597
Huge Navigator ZNF597 [HugePedia]
snp3D : Map Gene to Disease146434
BioCentury BCIQZNF597
ClinGenZNF597
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146434
Chemical/Pharm GKB GenePA134935893
Clinical trialZNF597
Miscellaneous
canSAR (ICR)ZNF597 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF597
EVEXZNF597
GoPubMedZNF597
iHOPZNF597
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:51 CEST 2017

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