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ZNF598 (zinc finger protein 598)

Identity

Alias_symbol (synonym)FLJ00086
Other alias-
HGNC (Hugo) ZNF598
LocusID (NCBI) 90850
Atlas_Id 76272
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1997652 and ends at 2009821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF598 (16p13.3) / C16orf62 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF598   28079
Cards
Entrez_Gene (NCBI)ZNF598  90850  zinc finger protein 598
Aliases
GeneCards (Weizmann)ZNF598
Ensembl hg19 (Hinxton)ENSG00000167962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167962 [Gene_View]  chr16:1997652-2009821 [Contig_View]  ZNF598 [Vega]
ICGC DataPortalENSG00000167962
TCGA cBioPortalZNF598
AceView (NCBI)ZNF598
Genatlas (Paris)ZNF598
WikiGenes90850
SOURCE (Princeton)ZNF598
Genetics Home Reference (NIH)ZNF598
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF598  -     chr16:1997652-2009821 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF598  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF598 - 16p13.3 [CytoView hg19]  ZNF598 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF598 [Mapview hg19]  ZNF598 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024487 AL834428 BC010990 BC029270 BC041015
RefSeq transcript (Entrez)NM_178167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF598
Cluster EST : UnigeneHs.343828 [ NCBI ]
CGAP (NCI)Hs.343828
Alternative Splicing GalleryENSG00000167962
Gene ExpressionZNF598 [ NCBI-GEO ]   ZNF598 [ EBI - ARRAY_EXPRESS ]   ZNF598 [ SEEK ]   ZNF598 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF598 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90850
GTEX Portal (Tissue expression)ZNF598
Human Protein AtlasENSG00000167962-ZNF598 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UK7
Splice isoforms : SwissVarQ86UK7
PhosPhoSitePlusQ86UK7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF598
DMDM Disease mutations90850
Blocks (Seattle)ZNF598
SuperfamilyQ86UK7
Human Protein Atlas [tissue]ENSG00000167962-ZNF598 [tissue]
Peptide AtlasQ86UK7
HPRD11732
IPIIPI00328737   IPI00513712   IPI00787519   IPI00787098   
Protein Interaction databases
DIP (DOE-UCLA)Q86UK7
IntAct (EBI)Q86UK7
FunCoupENSG00000167962
BioGRIDZNF598
STRING (EMBL)ZNF598
ZODIACZNF598
Ontologies - Pathways
QuickGOQ86UK7
Ontology : AmiGORNA binding  protein binding  protein monoubiquitination  zinc ion binding  protein ubiquitination  ribosome binding  ubiquitin protein ligase activity  ubiquitin protein ligase activity  rescue of stalled ribosome  rescue of stalled ribosome  
Ontology : EGO-EBIRNA binding  protein binding  protein monoubiquitination  zinc ion binding  protein ubiquitination  ribosome binding  ubiquitin protein ligase activity  ubiquitin protein ligase activity  rescue of stalled ribosome  rescue of stalled ribosome  
NDEx NetworkZNF598
Atlas of Cancer Signalling NetworkZNF598
Wikipedia pathwaysZNF598
Orthology - Evolution
OrthoDB90850
GeneTree (enSembl)ENSG00000167962
Phylogenetic Trees/Animal Genes : TreeFamZNF598
HOVERGENQ86UK7
HOGENOMQ86UK7
Homologs : HomoloGeneZNF598
Homology/Alignments : Family Browser (UCSC)ZNF598
Gene fusions - Rearrangements
Tumor Fusion PortalZNF598
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF598 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF598
dbVarZNF598
ClinVarZNF598
1000_GenomesZNF598 
Exome Variant ServerZNF598
ExAC (Exome Aggregation Consortium)ENSG00000167962
GNOMAD BrowserENSG00000167962
Genetic variants : HAPMAP90850
Genomic Variants (DGV)ZNF598 [DGVbeta]
DECIPHERZNF598 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF598 
Mutations
ICGC Data PortalZNF598 
TCGA Data PortalZNF598 
Broad Tumor PortalZNF598
OASIS PortalZNF598 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF598  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF598
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF598
DgiDB (Drug Gene Interaction Database)ZNF598
DoCM (Curated mutations)ZNF598 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF598 (select a term)
intoGenZNF598
Cancer3DZNF598(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF598
MedgenZNF598
Genetic Testing Registry ZNF598
NextProtQ86UK7 [Medical]
TSGene90850
GENETestsZNF598
Target ValidationZNF598
Huge Navigator ZNF598 [HugePedia]
snp3D : Map Gene to Disease90850
BioCentury BCIQZNF598
ClinGenZNF598
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90850
Chemical/Pharm GKB GenePA134944505
Clinical trialZNF598
Miscellaneous
canSAR (ICR)ZNF598 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF598
EVEXZNF598
GoPubMedZNF598
iHOPZNF598
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:45 CET 2017

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