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ZNF599 (zinc finger protein 599)

Identity

Alias_symbol (synonym)FLJ30663
Other alias-
HGNC (Hugo) ZNF599
LocusID (NCBI) 148103
Atlas_Id 76273
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 35248979 and ends at 35264134 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF599   26408
Cards
Entrez_Gene (NCBI)ZNF599  148103  zinc finger protein 599
Aliases
GeneCards (Weizmann)ZNF599
Ensembl hg19 (Hinxton)ENSG00000153896 [Gene_View]  chr19:35248979-35264134 [Contig_View]  ZNF599 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153896 [Gene_View]  chr19:35248979-35264134 [Contig_View]  ZNF599 [Vega]
ICGC DataPortalENSG00000153896
TCGA cBioPortalZNF599
AceView (NCBI)ZNF599
Genatlas (Paris)ZNF599
WikiGenes148103
SOURCE (Princeton)ZNF599
Genetics Home Reference (NIH)ZNF599
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF599  -     chr19:35248979-35264134 -  19q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF599  -     19q13.11   [Description]    (hg38-Dec_2013)
EnsemblZNF599 - 19q13.11 [CytoView hg19]  ZNF599 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF599 [Mapview hg19]  ZNF599 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055225 AK302548 AK307339 BC033354 BC044615
RefSeq transcript (Entrez)NM_001007247 NM_001007248
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF599
Cluster EST : UnigeneHs.590961 [ NCBI ]
CGAP (NCI)Hs.590961
Alternative Splicing GalleryENSG00000153896
Gene ExpressionZNF599 [ NCBI-GEO ]   ZNF599 [ EBI - ARRAY_EXPRESS ]   ZNF599 [ SEEK ]   ZNF599 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF599 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148103
GTEX Portal (Tissue expression)ZNF599
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NL3
Splice isoforms : SwissVarQ96NL3
PhosPhoSitePlusQ96NL3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF599
DMDM Disease mutations148103
Blocks (Seattle)ZNF599
SuperfamilyQ96NL3
Human Protein AtlasENSG00000153896
Peptide AtlasQ96NL3
HPRD18355
IPIIPI00043735   IPI00556113   IPI00871498   IPI00872255   
Protein Interaction databases
DIP (DOE-UCLA)Q96NL3
IntAct (EBI)Q96NL3
FunCoupENSG00000153896
BioGRIDZNF599
STRING (EMBL)ZNF599
ZODIACZNF599
Ontologies - Pathways
QuickGOQ96NL3
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF599
Atlas of Cancer Signalling NetworkZNF599
Wikipedia pathwaysZNF599
Orthology - Evolution
OrthoDB148103
GeneTree (enSembl)ENSG00000153896
Phylogenetic Trees/Animal Genes : TreeFamZNF599
HOVERGENQ96NL3
HOGENOMQ96NL3
Homologs : HomoloGeneZNF599
Homology/Alignments : Family Browser (UCSC)ZNF599
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF599 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF599
dbVarZNF599
ClinVarZNF599
1000_GenomesZNF599 
Exome Variant ServerZNF599
ExAC (Exome Aggregation Consortium)ZNF599 (select the gene name)
Genetic variants : HAPMAP148103
Genomic Variants (DGV)ZNF599 [DGVbeta]
DECIPHER (Syndromes)19:35248979-35264134  ENSG00000153896
CONAN: Copy Number AnalysisZNF599 
Mutations
ICGC Data PortalZNF599 
TCGA Data PortalZNF599 
Broad Tumor PortalZNF599
OASIS PortalZNF599 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF599  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF599
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF599
DgiDB (Drug Gene Interaction Database)ZNF599
DoCM (Curated mutations)ZNF599 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF599 (select a term)
intoGenZNF599
Cancer3DZNF599(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF599
Genetic Testing Registry ZNF599
NextProtQ96NL3 [Medical]
TSGene148103
GENETestsZNF599
Huge Navigator ZNF599 [HugePedia]
snp3D : Map Gene to Disease148103
BioCentury BCIQZNF599
ClinGenZNF599
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148103
Chemical/Pharm GKB GenePA134983786
Clinical trialZNF599
Miscellaneous
canSAR (ICR)ZNF599 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF599
EVEXZNF599
GoPubMedZNF599
iHOPZNF599
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:27 CET 2017

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