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ZNF600 (zinc finger protein 600)

Identity

Alias_symbol (synonym)KR-ZNF1
DKFZp686F06123
Other alias
HGNC (Hugo) ZNF600
LocusID (NCBI) 162966
Atlas_Id 76274
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52764813 and ends at 52786791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF600 (19q13.41) / NFX1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF600   30951
Cards
Entrez_Gene (NCBI)ZNF600  162966  zinc finger protein 600
AliasesKR-ZNF1
GeneCards (Weizmann)ZNF600
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:52764813-52786791 [Contig_View]  ZNF600 [Vega]
TCGA cBioPortalZNF600
AceView (NCBI)ZNF600
Genatlas (Paris)ZNF600
WikiGenes162966
SOURCE (Princeton)ZNF600
Genetics Home Reference (NIH)ZNF600
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF600  -     chr19:52764813-52786791 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF600  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF600 - 19q13.41 [CytoView hg19]  ZNF600 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF600 [Mapview hg19]  ZNF600 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075230 AK131231 BX640933 DB158392 U52096
RefSeq transcript (Entrez)NM_001321866 NM_001321867 NM_198457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF600
Cluster EST : UnigeneHs.696848 [ NCBI ]
CGAP (NCI)Hs.696848
Gene ExpressionZNF600 [ NCBI-GEO ]   ZNF600 [ EBI - ARRAY_EXPRESS ]   ZNF600 [ SEEK ]   ZNF600 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF600 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162966
GTEX Portal (Tissue expression)ZNF600
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNG1
Splice isoforms : SwissVarQ6ZNG1
PhosPhoSitePlusQ6ZNG1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF600
DMDM Disease mutations162966
Blocks (Seattle)ZNF600
SuperfamilyQ6ZNG1
Peptide AtlasQ6ZNG1
HPRD11733
IPIIPI00478824   IPI00013852   IPI00166965   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNG1
IntAct (EBI)Q6ZNG1
BioGRIDZNF600
STRING (EMBL)ZNF600
ZODIACZNF600
Ontologies - Pathways
QuickGOQ6ZNG1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF600
Atlas of Cancer Signalling NetworkZNF600
Wikipedia pathwaysZNF600
Orthology - Evolution
OrthoDB162966
Phylogenetic Trees/Animal Genes : TreeFamZNF600
HOVERGENQ6ZNG1
HOGENOMQ6ZNG1
Homologs : HomoloGeneZNF600
Homology/Alignments : Family Browser (UCSC)ZNF600
Gene fusions - Rearrangements
Tumor Fusion PortalZNF600
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF600 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF600
dbVarZNF600
ClinVarZNF600
1000_GenomesZNF600 
Exome Variant ServerZNF600
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP162966
Genomic Variants (DGV)ZNF600 [DGVbeta]
DECIPHERZNF600 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF600 
Mutations
ICGC Data PortalZNF600 
TCGA Data PortalZNF600 
Broad Tumor PortalZNF600
OASIS PortalZNF600 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF600  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF600
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF600
DgiDB (Drug Gene Interaction Database)ZNF600
DoCM (Curated mutations)ZNF600 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF600 (select a term)
intoGenZNF600
Cancer3DZNF600(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF600
MedgenZNF600
Genetic Testing Registry ZNF600
NextProtQ6ZNG1 [Medical]
TSGene162966
GENETestsZNF600
Target ValidationZNF600
Huge Navigator ZNF600 [HugePedia]
snp3D : Map Gene to Disease162966
BioCentury BCIQZNF600
ClinGenZNF600
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162966
Chemical/Pharm GKB GenePA134977938
Clinical trialZNF600
Miscellaneous
canSAR (ICR)ZNF600 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF600
EVEXZNF600
GoPubMedZNF600
iHOPZNF600
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:51 CET 2017

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