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ZNF605 (zinc finger protein 605)

Identity

Other alias-
HGNC (Hugo) ZNF605
LocusID (NCBI) 100289635
Atlas_Id 76275
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132921433 and ends at 132956306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDCD6 (5p15.33) / ZNF605 (12q24.33)ZNF605 (12q24.33) / CHFR (12q24.33)ZNF605 (12q24.33) / NCAN (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF605   28068
Cards
Entrez_Gene (NCBI)ZNF605  100289635  zinc finger protein 605
Aliases
GeneCards (Weizmann)ZNF605
Ensembl hg19 (Hinxton)ENSG00000196458 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196458 [Gene_View]  chr12:132921433-132956306 [Contig_View]  ZNF605 [Vega]
ICGC DataPortalENSG00000196458
TCGA cBioPortalZNF605
AceView (NCBI)ZNF605
Genatlas (Paris)ZNF605
WikiGenes100289635
SOURCE (Princeton)ZNF605
Genetics Home Reference (NIH)ZNF605
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF605  -     chr12:132921433-132956306 -  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF605  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblZNF605 - 12q24.33 [CytoView hg19]  ZNF605 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIZNF605 [Mapview hg19]  ZNF605 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027873 AK122878 AL832191 AL832623 BC020877
RefSeq transcript (Entrez)NM_001164715 NM_183238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF605
Cluster EST : UnigeneHs.29698 [ NCBI ]
CGAP (NCI)Hs.29698
Alternative Splicing GalleryENSG00000196458
Gene ExpressionZNF605 [ NCBI-GEO ]   ZNF605 [ EBI - ARRAY_EXPRESS ]   ZNF605 [ SEEK ]   ZNF605 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF605 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100289635
GTEX Portal (Tissue expression)ZNF605
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T29
Splice isoforms : SwissVarQ86T29
PhosPhoSitePlusQ86T29
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF605
DMDM Disease mutations100289635
Blocks (Seattle)ZNF605
SuperfamilyQ86T29
Human Protein AtlasENSG00000196458
Peptide AtlasQ86T29
IPIIPI00333449   IPI00937067   IPI00976501   IPI00902757   
Protein Interaction databases
DIP (DOE-UCLA)Q86T29
IntAct (EBI)Q86T29
FunCoupENSG00000196458
BioGRIDZNF605
STRING (EMBL)ZNF605
ZODIACZNF605
Ontologies - Pathways
QuickGOQ86T29
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF605
Atlas of Cancer Signalling NetworkZNF605
Wikipedia pathwaysZNF605
Orthology - Evolution
OrthoDB100289635
GeneTree (enSembl)ENSG00000196458
Phylogenetic Trees/Animal Genes : TreeFamZNF605
HOVERGENQ86T29
HOGENOMQ86T29
Homologs : HomoloGeneZNF605
Homology/Alignments : Family Browser (UCSC)ZNF605
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF605 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF605
dbVarZNF605
ClinVarZNF605
1000_GenomesZNF605 
Exome Variant ServerZNF605
ExAC (Exome Aggregation Consortium)ZNF605 (select the gene name)
Genetic variants : HAPMAP100289635
Genomic Variants (DGV)ZNF605 [DGVbeta]
DECIPHERZNF605 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF605 
Mutations
ICGC Data PortalZNF605 
TCGA Data PortalZNF605 
Broad Tumor PortalZNF605
OASIS PortalZNF605 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF605  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF605
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF605
DgiDB (Drug Gene Interaction Database)ZNF605
DoCM (Curated mutations)ZNF605 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF605 (select a term)
intoGenZNF605
Cancer3DZNF605(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF605
Genetic Testing Registry ZNF605
NextProtQ86T29 [Medical]
TSGene100289635
GENETestsZNF605
Target ValidationZNF605
Huge Navigator ZNF605 [HugePedia]
snp3D : Map Gene to Disease100289635
BioCentury BCIQZNF605
ClinGenZNF605
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289635
Chemical/Pharm GKB GenePA134901606
Clinical trialZNF605
Miscellaneous
canSAR (ICR)ZNF605 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF605
EVEXZNF605
GoPubMedZNF605
iHOPZNF605
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:52 CEST 2017

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