Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF606 (zinc finger protein 606)

Identity

Alias_namesZNF328
Alias_symbol (synonym)FLJ14260
KIAA1852
Other alias
HGNC (Hugo) ZNF606
LocusID (NCBI) 80095
Atlas_Id 49947
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57977053 and ends at 58002827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FRYL (4p11) / ZNF606 (19q13.43)ZNF606 (19q13.43) / C19orf18 (19q13.43)ZNF606 (19q13.43) / RDH13 (19q13.42)
ZNF606 (19q13.43) / ZNF606 (19q13.43)ZNF606 (19q13.43) / ZSCAN18 (19q13.43)FRYL 4p11 / ZNF606 19q13.43
ZNF606 19q13.43 / RDH13 19q13.42

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF606   25879
Cards
Entrez_Gene (NCBI)ZNF606  80095  zinc finger protein 606
AliasesZNF328
GeneCards (Weizmann)ZNF606
Ensembl hg19 (Hinxton)ENSG00000166704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166704 [Gene_View]  chr19:57977053-58002827 [Contig_View]  ZNF606 [Vega]
ICGC DataPortalENSG00000166704
TCGA cBioPortalZNF606
AceView (NCBI)ZNF606
Genatlas (Paris)ZNF606
WikiGenes80095
SOURCE (Princeton)ZNF606
Genetics Home Reference (NIH)ZNF606
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF606  -     chr19:57977053-58002827 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF606  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF606 - 19q13.43 [CytoView hg19]  ZNF606 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF606 [Mapview hg19]  ZNF606 [Mapview hg38]
OMIM613905   
Gene and transcription
Genbank (Entrez)AA033715 AB058755 AF455357 AI766866 AK024322
RefSeq transcript (Entrez)NM_001348022 NM_001348023 NM_001348024 NM_001348025 NM_025027
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF606
Cluster EST : UnigeneHs.654967 [ NCBI ]
CGAP (NCI)Hs.654967
Alternative Splicing GalleryENSG00000166704
Gene ExpressionZNF606 [ NCBI-GEO ]   ZNF606 [ EBI - ARRAY_EXPRESS ]   ZNF606 [ SEEK ]   ZNF606 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF606 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80095
GTEX Portal (Tissue expression)ZNF606
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXB4
Splice isoforms : SwissVarQ8WXB4
PhosPhoSitePlusQ8WXB4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF606
DMDM Disease mutations80095
Blocks (Seattle)ZNF606
SuperfamilyQ8WXB4
Human Protein AtlasENSG00000166704
Peptide AtlasQ8WXB4
HPRD15871
IPIIPI00328220   IPI01009863   IPI01020798   IPI01021212   IPI01021078   IPI01021506   IPI01021367   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXB4
IntAct (EBI)Q8WXB4
FunCoupENSG00000166704
BioGRIDZNF606
STRING (EMBL)ZNF606
ZODIACZNF606
Ontologies - Pathways
QuickGOQ8WXB4
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF606
Atlas of Cancer Signalling NetworkZNF606
Wikipedia pathwaysZNF606
Orthology - Evolution
OrthoDB80095
GeneTree (enSembl)ENSG00000166704
Phylogenetic Trees/Animal Genes : TreeFamZNF606
HOVERGENQ8WXB4
HOGENOMQ8WXB4
Homologs : HomoloGeneZNF606
Homology/Alignments : Family Browser (UCSC)ZNF606
Gene fusions - Rearrangements
Fusion : MitelmanFRYL/ZNF606 [4p11/19q13.43]  [t(4;19)(p12;q13)]  
Fusion : MitelmanZNF606/RDH13 [19q13.43/19q13.42]  [t(19;19)(q13;q13)]  
Fusion: TCGAFRYL 4p11 ZNF606 19q13.43 BRCA
Fusion: TCGAZNF606 19q13.43 RDH13 19q13.42 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF606 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF606
dbVarZNF606
ClinVarZNF606
1000_GenomesZNF606 
Exome Variant ServerZNF606
ExAC (Exome Aggregation Consortium)ZNF606 (select the gene name)
Genetic variants : HAPMAP80095
Genomic Variants (DGV)ZNF606 [DGVbeta]
DECIPHERZNF606 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF606 
Mutations
ICGC Data PortalZNF606 
TCGA Data PortalZNF606 
Broad Tumor PortalZNF606
OASIS PortalZNF606 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF606  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF606
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF606
DgiDB (Drug Gene Interaction Database)ZNF606
DoCM (Curated mutations)ZNF606 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF606 (select a term)
intoGenZNF606
Cancer3DZNF606(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613905   
Orphanet
MedgenZNF606
Genetic Testing Registry ZNF606
NextProtQ8WXB4 [Medical]
TSGene80095
GENETestsZNF606
Target ValidationZNF606
Huge Navigator ZNF606 [HugePedia]
snp3D : Map Gene to Disease80095
BioCentury BCIQZNF606
ClinGenZNF606
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80095
Chemical/Pharm GKB GenePA134931984
Clinical trialZNF606
Miscellaneous
canSAR (ICR)ZNF606 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF606
EVEXZNF606
GoPubMedZNF606
iHOPZNF606
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:33 CEST 2017

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