Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF607 (zinc finger protein 607)

Identity

Alias_symbol (synonym)MGC13071
FLJ14802
Other alias-
HGNC (Hugo) ZNF607
LocusID (NCBI) 84775
Atlas_Id 76276
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 38187264 and ends at 38210089 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PEX26 (22q11.21) / ZNF607 (19q13.12)TNNI3 (19q13.42) / ZNF607 (19q13.12)ZNF607 (19q13.12) / CAPN12 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF607   28192
Cards
Entrez_Gene (NCBI)ZNF607  84775  zinc finger protein 607
Aliases
GeneCards (Weizmann)ZNF607
Ensembl hg19 (Hinxton)ENSG00000198182 [Gene_View]  chr19:38187264-38210089 [Contig_View]  ZNF607 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198182 [Gene_View]  chr19:38187264-38210089 [Contig_View]  ZNF607 [Vega]
ICGC DataPortalENSG00000198182
TCGA cBioPortalZNF607
AceView (NCBI)ZNF607
Genatlas (Paris)ZNF607
WikiGenes84775
SOURCE (Princeton)ZNF607
Genetics Home Reference (NIH)ZNF607
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF607  -     chr19:38187264-38210089 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF607  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblZNF607 - 19q13.12 [CytoView hg19]  ZNF607 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF607 [Mapview hg19]  ZNF607 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209242 AK027708 AK127464 AK131557 AK131559
RefSeq transcript (Entrez)NM_001172677 NM_032689
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF607
Cluster EST : UnigeneHs.116622 [ NCBI ]
CGAP (NCI)Hs.116622
Alternative Splicing GalleryENSG00000198182
Gene ExpressionZNF607 [ NCBI-GEO ]   ZNF607 [ EBI - ARRAY_EXPRESS ]   ZNF607 [ SEEK ]   ZNF607 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF607 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84775
GTEX Portal (Tissue expression)ZNF607
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SK3
Splice isoforms : SwissVarQ96SK3
PhosPhoSitePlusQ96SK3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF607
DMDM Disease mutations84775
Blocks (Seattle)ZNF607
SuperfamilyQ96SK3
Human Protein AtlasENSG00000198182
Peptide AtlasQ96SK3
HPRD18356
IPIIPI00100922   IPI00386679   IPI00873015   
Protein Interaction databases
DIP (DOE-UCLA)Q96SK3
IntAct (EBI)Q96SK3
FunCoupENSG00000198182
BioGRIDZNF607
STRING (EMBL)ZNF607
ZODIACZNF607
Ontologies - Pathways
QuickGOQ96SK3
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF607
Atlas of Cancer Signalling NetworkZNF607
Wikipedia pathwaysZNF607
Orthology - Evolution
OrthoDB84775
GeneTree (enSembl)ENSG00000198182
Phylogenetic Trees/Animal Genes : TreeFamZNF607
HOVERGENQ96SK3
HOGENOMQ96SK3
Homologs : HomoloGeneZNF607
Homology/Alignments : Family Browser (UCSC)ZNF607
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF607 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF607
dbVarZNF607
ClinVarZNF607
1000_GenomesZNF607 
Exome Variant ServerZNF607
ExAC (Exome Aggregation Consortium)ZNF607 (select the gene name)
Genetic variants : HAPMAP84775
Genomic Variants (DGV)ZNF607 [DGVbeta]
DECIPHER (Syndromes)19:38187264-38210089  ENSG00000198182
CONAN: Copy Number AnalysisZNF607 
Mutations
ICGC Data PortalZNF607 
TCGA Data PortalZNF607 
Broad Tumor PortalZNF607
OASIS PortalZNF607 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF607  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF607
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF607
DgiDB (Drug Gene Interaction Database)ZNF607
DoCM (Curated mutations)ZNF607 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF607 (select a term)
intoGenZNF607
Cancer3DZNF607(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF607
Genetic Testing Registry ZNF607
NextProtQ96SK3 [Medical]
TSGene84775
GENETestsZNF607
Huge Navigator ZNF607 [HugePedia]
snp3D : Map Gene to Disease84775
BioCentury BCIQZNF607
ClinGenZNF607
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84775
Chemical/Pharm GKB GenePA134938252
Clinical trialZNF607
Miscellaneous
canSAR (ICR)ZNF607 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF607
EVEXZNF607
GoPubMedZNF607
iHOPZNF607
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:28 CET 2017

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