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ZNF608 (zinc finger protein 608)

Identity

Alias_symbol (synonym)KIAA1281
DKFZp434M098
NY-REN-36
Other alias
HGNC (Hugo) ZNF608
LocusID (NCBI) 57507
Atlas_Id 76277
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 124636917 and ends at 124745112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH3 (16q22.1) / ZNF608 (5q23.2)ZNF608 (5q23.2) / FAM172A (5q15)ZNF608 (5q23.2) / PMPCB (7q22.1)
ZNF608 (5q23.2) / REEP3 (10q21.3)ZNF608 (5q23.2) / SH3PXD2A (10q24.33)ZNF608 (5q23.2) / SLC9A9 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF608   29238
Cards
Entrez_Gene (NCBI)ZNF608  57507  zinc finger protein 608
AliasesNY-REN-36
GeneCards (Weizmann)ZNF608
Ensembl hg19 (Hinxton)ENSG00000168916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168916 [Gene_View]  chr5:124636917-124745112 [Contig_View]  ZNF608 [Vega]
ICGC DataPortalENSG00000168916
TCGA cBioPortalZNF608
AceView (NCBI)ZNF608
Genatlas (Paris)ZNF608
WikiGenes57507
SOURCE (Princeton)ZNF608
Genetics Home Reference (NIH)ZNF608
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF608  -     chr5:124636917-124745112 -  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF608  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblZNF608 - 5q23.2 [CytoView hg19]  ZNF608 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIZNF608 [Mapview hg19]  ZNF608 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033107 AF155106 AK056247 AL117587 BC038370
RefSeq transcript (Entrez)NM_020747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF608
Cluster EST : UnigeneHs.266616 [ NCBI ]
CGAP (NCI)Hs.266616
Alternative Splicing GalleryENSG00000168916
Gene ExpressionZNF608 [ NCBI-GEO ]   ZNF608 [ EBI - ARRAY_EXPRESS ]   ZNF608 [ SEEK ]   ZNF608 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF608 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57507
GTEX Portal (Tissue expression)ZNF608
Human Protein AtlasENSG00000168916-ZNF608 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULD9
Splice isoforms : SwissVarQ9ULD9
PhosPhoSitePlusQ9ULD9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF608
DMDM Disease mutations57507
Blocks (Seattle)ZNF608
SuperfamilyQ9ULD9
Human Protein Atlas [tissue]ENSG00000168916-ZNF608 [tissue]
Peptide AtlasQ9ULD9
HPRD18357
IPIIPI00166972   IPI00830019   IPI00830087   IPI00965996   IPI00965730   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULD9
IntAct (EBI)Q9ULD9
FunCoupENSG00000168916
BioGRIDZNF608
STRING (EMBL)ZNF608
ZODIACZNF608
Ontologies - Pathways
QuickGOQ9ULD9
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkZNF608
Atlas of Cancer Signalling NetworkZNF608
Wikipedia pathwaysZNF608
Orthology - Evolution
OrthoDB57507
GeneTree (enSembl)ENSG00000168916
Phylogenetic Trees/Animal Genes : TreeFamZNF608
HOVERGENQ9ULD9
HOGENOMQ9ULD9
Homologs : HomoloGeneZNF608
Homology/Alignments : Family Browser (UCSC)ZNF608
Gene fusions - Rearrangements
Tumor Fusion PortalZNF608
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF608 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF608
dbVarZNF608
ClinVarZNF608
1000_GenomesZNF608 
Exome Variant ServerZNF608
ExAC (Exome Aggregation Consortium)ENSG00000168916
GNOMAD BrowserENSG00000168916
Genetic variants : HAPMAP57507
Genomic Variants (DGV)ZNF608 [DGVbeta]
DECIPHERZNF608 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF608 
Mutations
ICGC Data PortalZNF608 
TCGA Data PortalZNF608 
Broad Tumor PortalZNF608
OASIS PortalZNF608 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF608  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF608
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF608
DgiDB (Drug Gene Interaction Database)ZNF608
DoCM (Curated mutations)ZNF608 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF608 (select a term)
intoGenZNF608
Cancer3DZNF608(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF608
MedgenZNF608
Genetic Testing Registry ZNF608
NextProtQ9ULD9 [Medical]
TSGene57507
GENETestsZNF608
Target ValidationZNF608
Huge Navigator ZNF608 [HugePedia]
snp3D : Map Gene to Disease57507
BioCentury BCIQZNF608
ClinGenZNF608
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57507
Chemical/Pharm GKB GenePA134945727
Clinical trialZNF608
Miscellaneous
canSAR (ICR)ZNF608 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF608
EVEXZNF608
GoPubMedZNF608
iHOPZNF608
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:13:25 CET 2017

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