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ZNF609 (zinc finger protein 609)

Identity

Alias_symbol (synonym)KIAA0295
Other alias-
HGNC (Hugo) ZNF609
LocusID (NCBI) 23060
Atlas_Id 76278
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64791619 and ends at 64978266 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COL2A1 (12q13.11) / ZNF609 (15q22.31)NXF1 (11q12.3) / ZNF609 (15q22.31)ODF3B (22q13.33) / ZNF609 (15q22.31)
PIAS1 (15q23) / ZNF609 (15q22.31)PTBP2 (1p21.3) / ZNF609 (15q22.31)ZNF609 (15q22.31) / PDCD7 (15q22.31)
ZNF609 (15q22.31) / PRKCE (2p21)ZNF609 (15q22.31) / ZNF609 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF609   29003
Cards
Entrez_Gene (NCBI)ZNF609  23060  zinc finger protein 609
Aliases
GeneCards (Weizmann)ZNF609
Ensembl hg19 (Hinxton)ENSG00000180357 [Gene_View]  chr15:64791619-64978266 [Contig_View]  ZNF609 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180357 [Gene_View]  chr15:64791619-64978266 [Contig_View]  ZNF609 [Vega]
ICGC DataPortalENSG00000180357
TCGA cBioPortalZNF609
AceView (NCBI)ZNF609
Genatlas (Paris)ZNF609
WikiGenes23060
SOURCE (Princeton)ZNF609
Genetics Home Reference (NIH)ZNF609
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF609  -     chr15:64791619-64978266 +  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF609  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblZNF609 - 15q22.31 [CytoView hg19]  ZNF609 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIZNF609 [Mapview hg19]  ZNF609 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002293 AW956219 BC000648 BC009226 BC014251
RefSeq transcript (Entrez)NM_015042
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)ZNF609
Cluster EST : UnigeneHs.696256 [ NCBI ]
CGAP (NCI)Hs.696256
Alternative Splicing GalleryENSG00000180357
Gene ExpressionZNF609 [ NCBI-GEO ]   ZNF609 [ EBI - ARRAY_EXPRESS ]   ZNF609 [ SEEK ]   ZNF609 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF609 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23060
GTEX Portal (Tissue expression)ZNF609
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15014   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15014  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15014
Splice isoforms : SwissVarO15014
PhosPhoSitePlusO15014
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF609
DMDM Disease mutations23060
Blocks (Seattle)ZNF609
SuperfamilyO15014
Human Protein AtlasENSG00000180357
Peptide AtlasO15014
HPRD18754
IPIIPI00307591   IPI00853436   
Protein Interaction databases
DIP (DOE-UCLA)O15014
IntAct (EBI)O15014
FunCoupENSG00000180357
BioGRIDZNF609
STRING (EMBL)ZNF609
ZODIACZNF609
Ontologies - Pathways
QuickGOO15014
Ontology : AmiGOnucleus  metal ion binding  
Ontology : EGO-EBInucleus  metal ion binding  
NDEx NetworkZNF609
Atlas of Cancer Signalling NetworkZNF609
Wikipedia pathwaysZNF609
Orthology - Evolution
OrthoDB23060
GeneTree (enSembl)ENSG00000180357
Phylogenetic Trees/Animal Genes : TreeFamZNF609
HOVERGENO15014
HOGENOMO15014
Homologs : HomoloGeneZNF609
Homology/Alignments : Family Browser (UCSC)ZNF609
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF609 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF609
dbVarZNF609
ClinVarZNF609
1000_GenomesZNF609 
Exome Variant ServerZNF609
ExAC (Exome Aggregation Consortium)ZNF609 (select the gene name)
Genetic variants : HAPMAP23060
Genomic Variants (DGV)ZNF609 [DGVbeta]
DECIPHER (Syndromes)15:64791619-64978266  ENSG00000180357
CONAN: Copy Number AnalysisZNF609 
Mutations
ICGC Data PortalZNF609 
TCGA Data PortalZNF609 
Broad Tumor PortalZNF609
OASIS PortalZNF609 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF609  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF609
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF609
DgiDB (Drug Gene Interaction Database)ZNF609
DoCM (Curated mutations)ZNF609 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF609 (select a term)
intoGenZNF609
Cancer3DZNF609(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF609
Genetic Testing Registry ZNF609
NextProtO15014 [Medical]
TSGene23060
GENETestsZNF609
Huge Navigator ZNF609 [HugePedia]
snp3D : Map Gene to Disease23060
BioCentury BCIQZNF609
ClinGenZNF609
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23060
Chemical/Pharm GKB GenePA134952302
Clinical trialZNF609
Miscellaneous
canSAR (ICR)ZNF609 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF609
EVEXZNF609
GoPubMedZNF609
iHOPZNF609
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:28 CET 2017

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