Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF609 (zinc finger protein 609)

Identity

Other alias-
HGNC (Hugo) ZNF609
LocusID (NCBI) 23060
Atlas_Id 56938
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64499420 and ends at 64686067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL2A1 (12q13.11) / ZNF609 (15q22.31)NXF1 (11q12.3) / ZNF609 (15q22.31)ODF3B (22q13.33) / ZNF609 (15q22.31)
PIAS1 (15q23) / ZNF609 (15q22.31)PTBP2 (1p21.3) / ZNF609 (15q22.31)ZNF609 (15q22.31) / PDCD7 (15q22.31)
ZNF609 (15q22.31) / PRKCE (2p21)ZNF609 (15q22.31) / ZNF609 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF609   29003
Cards
Entrez_Gene (NCBI)ZNF609  23060  zinc finger protein 609
Aliases
GeneCards (Weizmann)ZNF609
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:64499420-64686067 [Contig_View]  ZNF609 [Vega]
TCGA cBioPortalZNF609
AceView (NCBI)ZNF609
Genatlas (Paris)ZNF609
WikiGenes23060
SOURCE (Princeton)ZNF609
Genetics Home Reference (NIH)ZNF609
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF609  -     chr15:64499420-64686067 +  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF609  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblZNF609 - 15q22.31 [CytoView hg19]  ZNF609 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIZNF609 [Mapview hg19]  ZNF609 [Mapview hg38]
OMIM617474   
Gene and transcription
Genbank (Entrez)AB002293 AW956219 BC000648 BC009226 BC014251
RefSeq transcript (Entrez)NM_015042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF609
Cluster EST : UnigeneHs.696256 [ NCBI ]
CGAP (NCI)Hs.696256
Gene ExpressionZNF609 [ NCBI-GEO ]   ZNF609 [ EBI - ARRAY_EXPRESS ]   ZNF609 [ SEEK ]   ZNF609 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF609 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23060
GTEX Portal (Tissue expression)ZNF609
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15014   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15014  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15014
Splice isoforms : SwissVarO15014
PhosPhoSitePlusO15014
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF609
DMDM Disease mutations23060
Blocks (Seattle)ZNF609
SuperfamilyO15014
Peptide AtlasO15014
IPIIPI00307591   IPI00853436   
Protein Interaction databases
DIP (DOE-UCLA)O15014
IntAct (EBI)O15014
BioGRIDZNF609
STRING (EMBL)ZNF609
ZODIACZNF609
Ontologies - Pathways
QuickGOO15014
Ontology : AmiGOnucleic acid binding  nucleus  muscle organ development  metal ion binding  regulation of myoblast proliferation  
Ontology : EGO-EBInucleic acid binding  nucleus  muscle organ development  metal ion binding  regulation of myoblast proliferation  
NDEx NetworkZNF609
Atlas of Cancer Signalling NetworkZNF609
Wikipedia pathwaysZNF609
Orthology - Evolution
OrthoDB23060
Phylogenetic Trees/Animal Genes : TreeFamZNF609
HOVERGENO15014
HOGENOMO15014
Homologs : HomoloGeneZNF609
Homology/Alignments : Family Browser (UCSC)ZNF609
Gene fusions - Rearrangements
Tumor Fusion PortalZNF609
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF609 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF609
dbVarZNF609
ClinVarZNF609
1000_GenomesZNF609 
Exome Variant ServerZNF609
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP23060
Genomic Variants (DGV)ZNF609 [DGVbeta]
DECIPHERZNF609 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF609 
Mutations
ICGC Data PortalZNF609 
TCGA Data PortalZNF609 
Broad Tumor PortalZNF609
OASIS PortalZNF609 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF609  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF609
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF609
DgiDB (Drug Gene Interaction Database)ZNF609
DoCM (Curated mutations)ZNF609 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF609 (select a term)
intoGenZNF609
Cancer3DZNF609(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617474   
Orphanet
DisGeNETZNF609
MedgenZNF609
Genetic Testing Registry ZNF609
NextProtO15014 [Medical]
TSGene23060
GENETestsZNF609
Target ValidationZNF609
Huge Navigator ZNF609 [HugePedia]
snp3D : Map Gene to Disease23060
BioCentury BCIQZNF609
ClinGenZNF609
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23060
Chemical/Pharm GKB GenePA134952302
Clinical trialZNF609
Miscellaneous
canSAR (ICR)ZNF609 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF609
EVEXZNF609
GoPubMedZNF609
iHOPZNF609
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:42:40 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.