Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF610 (zinc finger protein 610)

Identity

Alias_symbol (synonym)FLJ36040
Other alias-
HGNC (Hugo) ZNF610
LocusID (NCBI) 162963
Atlas_Id 76279
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52336245 and ends at 52367123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF610 (19q13.41) / RALA (7p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF610   26687
Cards
Entrez_Gene (NCBI)ZNF610  162963  zinc finger protein 610
Aliases
GeneCards (Weizmann)ZNF610
Ensembl hg19 (Hinxton)ENSG00000167554 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167554 [Gene_View]  chr19:52336245-52367123 [Contig_View]  ZNF610 [Vega]
ICGC DataPortalENSG00000167554
TCGA cBioPortalZNF610
AceView (NCBI)ZNF610
Genatlas (Paris)ZNF610
WikiGenes162963
SOURCE (Princeton)ZNF610
Genetics Home Reference (NIH)ZNF610
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF610  -     chr19:52336245-52367123 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF610  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF610 - 19q13.41 [CytoView hg19]  ZNF610 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF610 [Mapview hg19]  ZNF610 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093359 AK290888 AL831871 BC039903 BC105967
RefSeq transcript (Entrez)NM_001161425 NM_001161426 NM_001161427 NM_173530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF610
Cluster EST : UnigeneHs.147025 [ NCBI ]
CGAP (NCI)Hs.147025
Alternative Splicing GalleryENSG00000167554
Gene ExpressionZNF610 [ NCBI-GEO ]   ZNF610 [ EBI - ARRAY_EXPRESS ]   ZNF610 [ SEEK ]   ZNF610 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF610 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162963
GTEX Portal (Tissue expression)ZNF610
Human Protein AtlasENSG00000167554-ZNF610 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9Z0
Splice isoforms : SwissVarQ8N9Z0
PhosPhoSitePlusQ8N9Z0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF610
DMDM Disease mutations162963
Blocks (Seattle)ZNF610
SuperfamilyQ8N9Z0
Human Protein Atlas [tissue]ENSG00000167554-ZNF610 [tissue]
Peptide AtlasQ8N9Z0
HPRD11735
IPIIPI00167850   IPI00384709   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9Z0
IntAct (EBI)Q8N9Z0
FunCoupENSG00000167554
BioGRIDZNF610
STRING (EMBL)ZNF610
ZODIACZNF610
Ontologies - Pathways
QuickGOQ8N9Z0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF610
Atlas of Cancer Signalling NetworkZNF610
Wikipedia pathwaysZNF610
Orthology - Evolution
OrthoDB162963
GeneTree (enSembl)ENSG00000167554
Phylogenetic Trees/Animal Genes : TreeFamZNF610
HOVERGENQ8N9Z0
HOGENOMQ8N9Z0
Homologs : HomoloGeneZNF610
Homology/Alignments : Family Browser (UCSC)ZNF610
Gene fusions - Rearrangements
Tumor Fusion PortalZNF610
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF610 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF610
dbVarZNF610
ClinVarZNF610
1000_GenomesZNF610 
Exome Variant ServerZNF610
ExAC (Exome Aggregation Consortium)ENSG00000167554
GNOMAD BrowserENSG00000167554
Genetic variants : HAPMAP162963
Genomic Variants (DGV)ZNF610 [DGVbeta]
DECIPHERZNF610 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF610 
Mutations
ICGC Data PortalZNF610 
TCGA Data PortalZNF610 
Broad Tumor PortalZNF610
OASIS PortalZNF610 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF610  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF610
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF610
DgiDB (Drug Gene Interaction Database)ZNF610
DoCM (Curated mutations)ZNF610 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF610 (select a term)
intoGenZNF610
Cancer3DZNF610(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF610
MedgenZNF610
Genetic Testing Registry ZNF610
NextProtQ8N9Z0 [Medical]
TSGene162963
GENETestsZNF610
Target ValidationZNF610
Huge Navigator ZNF610 [HugePedia]
snp3D : Map Gene to Disease162963
BioCentury BCIQZNF610
ClinGenZNF610
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162963
Chemical/Pharm GKB GenePA134963099
Clinical trialZNF610
Miscellaneous
canSAR (ICR)ZNF610 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF610
EVEXZNF610
GoPubMedZNF610
iHOPZNF610
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:51 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.