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ZNF611 (zinc finger protein 611)

Identity

Alias_symbol (synonym)MGC5384
Other alias-
HGNC (Hugo) ZNF611
LocusID (NCBI) 81856
Atlas_Id 76280
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 53206066 and ends at 53238307 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF611 (19q13.41) / DYNC1LI2 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF611   28766
Cards
Entrez_Gene (NCBI)ZNF611  81856  zinc finger protein 611
Aliases
GeneCards (Weizmann)ZNF611
Ensembl hg19 (Hinxton)ENSG00000213020 [Gene_View]  chr19:53206066-53238307 [Contig_View]  ZNF611 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213020 [Gene_View]  chr19:53206066-53238307 [Contig_View]  ZNF611 [Vega]
ICGC DataPortalENSG00000213020
TCGA cBioPortalZNF611
AceView (NCBI)ZNF611
Genatlas (Paris)ZNF611
WikiGenes81856
SOURCE (Princeton)ZNF611
Genetics Home Reference (NIH)ZNF611
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF611  -     chr19:53206066-53238307 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF611  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblZNF611 - 19q13.41 [CytoView hg19]  ZNF611 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF611 [Mapview hg19]  ZNF611 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021787 AK091389 AK097434 AL834123 BC000918
RefSeq transcript (Entrez)NM_001161499 NM_001161500 NM_001161501 NM_030972
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF611
Cluster EST : UnigeneHs.143951 [ NCBI ]
CGAP (NCI)Hs.143951
Alternative Splicing GalleryENSG00000213020
Gene ExpressionZNF611 [ NCBI-GEO ]   ZNF611 [ EBI - ARRAY_EXPRESS ]   ZNF611 [ SEEK ]   ZNF611 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF611 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81856
GTEX Portal (Tissue expression)ZNF611
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N823   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N823  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N823
Splice isoforms : SwissVarQ8N823
PhosPhoSitePlusQ8N823
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF611
DMDM Disease mutations81856
Blocks (Seattle)ZNF611
SuperfamilyQ8N823
Human Protein AtlasENSG00000213020
Peptide AtlasQ8N823
HPRD15872
IPIIPI00297921   IPI00641329   
Protein Interaction databases
DIP (DOE-UCLA)Q8N823
IntAct (EBI)Q8N823
FunCoupENSG00000213020
BioGRIDZNF611
STRING (EMBL)ZNF611
ZODIACZNF611
Ontologies - Pathways
QuickGOQ8N823
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF611
Atlas of Cancer Signalling NetworkZNF611
Wikipedia pathwaysZNF611
Orthology - Evolution
OrthoDB81856
GeneTree (enSembl)ENSG00000213020
Phylogenetic Trees/Animal Genes : TreeFamZNF611
HOVERGENQ8N823
HOGENOMQ8N823
Homologs : HomoloGeneZNF611
Homology/Alignments : Family Browser (UCSC)ZNF611
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF611 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF611
dbVarZNF611
ClinVarZNF611
1000_GenomesZNF611 
Exome Variant ServerZNF611
ExAC (Exome Aggregation Consortium)ZNF611 (select the gene name)
Genetic variants : HAPMAP81856
Genomic Variants (DGV)ZNF611 [DGVbeta]
DECIPHER (Syndromes)19:53206066-53238307  ENSG00000213020
CONAN: Copy Number AnalysisZNF611 
Mutations
ICGC Data PortalZNF611 
TCGA Data PortalZNF611 
Broad Tumor PortalZNF611
OASIS PortalZNF611 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF611  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF611
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF611
DgiDB (Drug Gene Interaction Database)ZNF611
DoCM (Curated mutations)ZNF611 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF611 (select a term)
intoGenZNF611
Cancer3DZNF611(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF611
Genetic Testing Registry ZNF611
NextProtQ8N823 [Medical]
TSGene81856
GENETestsZNF611
Huge Navigator ZNF611 [HugePedia]
snp3D : Map Gene to Disease81856
BioCentury BCIQZNF611
ClinGenZNF611
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81856
Chemical/Pharm GKB GenePA134988282
Clinical trialZNF611
Miscellaneous
canSAR (ICR)ZNF611 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF611
EVEXZNF611
GoPubMedZNF611
iHOPZNF611
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:29 CET 2017

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