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ZNF613 (zinc finger protein 613)

Identity

Alias_symbol (synonym)FLJ13590
Other alias-
HGNC (Hugo) ZNF613
LocusID (NCBI) 79898
Atlas_Id 76281
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51927435 and ends at 51945758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF613 (19q13.41) / CYP2A6 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF613   25827
Cards
Entrez_Gene (NCBI)ZNF613  79898  zinc finger protein 613
Aliases
GeneCards (Weizmann)ZNF613
Ensembl hg19 (Hinxton)ENSG00000176024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176024 [Gene_View]  chr19:51927435-51945758 [Contig_View]  ZNF613 [Vega]
ICGC DataPortalENSG00000176024
TCGA cBioPortalZNF613
AceView (NCBI)ZNF613
Genatlas (Paris)ZNF613
WikiGenes79898
SOURCE (Princeton)ZNF613
Genetics Home Reference (NIH)ZNF613
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF613  -     chr19:51927435-51945758 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF613  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF613 - 19q13.41 [CytoView hg19]  ZNF613 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF613 [Mapview hg19]  ZNF613 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023652 AK027565 BC057776 CA427456
RefSeq transcript (Entrez)NM_001031721 NM_024840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF613
Cluster EST : UnigeneHs.183390 [ NCBI ]
CGAP (NCI)Hs.183390
Alternative Splicing GalleryENSG00000176024
Gene ExpressionZNF613 [ NCBI-GEO ]   ZNF613 [ EBI - ARRAY_EXPRESS ]   ZNF613 [ SEEK ]   ZNF613 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF613 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79898
GTEX Portal (Tissue expression)ZNF613
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PF04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PF04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PF04
Splice isoforms : SwissVarQ6PF04
PhosPhoSitePlusQ6PF04
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF613
DMDM Disease mutations79898
Blocks (Seattle)ZNF613
SuperfamilyQ6PF04
Human Protein AtlasENSG00000176024
Peptide AtlasQ6PF04
HPRD15873
IPIIPI00045882   IPI00645769   IPI01014018   
Protein Interaction databases
DIP (DOE-UCLA)Q6PF04
IntAct (EBI)Q6PF04
FunCoupENSG00000176024
BioGRIDZNF613
STRING (EMBL)ZNF613
ZODIACZNF613
Ontologies - Pathways
QuickGOQ6PF04
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF613
Atlas of Cancer Signalling NetworkZNF613
Wikipedia pathwaysZNF613
Orthology - Evolution
OrthoDB79898
GeneTree (enSembl)ENSG00000176024
Phylogenetic Trees/Animal Genes : TreeFamZNF613
HOVERGENQ6PF04
HOGENOMQ6PF04
Homologs : HomoloGeneZNF613
Homology/Alignments : Family Browser (UCSC)ZNF613
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF613 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF613
dbVarZNF613
ClinVarZNF613
1000_GenomesZNF613 
Exome Variant ServerZNF613
ExAC (Exome Aggregation Consortium)ZNF613 (select the gene name)
Genetic variants : HAPMAP79898
Genomic Variants (DGV)ZNF613 [DGVbeta]
DECIPHERZNF613 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF613 
Mutations
ICGC Data PortalZNF613 
TCGA Data PortalZNF613 
Broad Tumor PortalZNF613
OASIS PortalZNF613 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF613  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF613
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF613
DgiDB (Drug Gene Interaction Database)ZNF613
DoCM (Curated mutations)ZNF613 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF613 (select a term)
intoGenZNF613
Cancer3DZNF613(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF613
Genetic Testing Registry ZNF613
NextProtQ6PF04 [Medical]
TSGene79898
GENETestsZNF613
Target ValidationZNF613
Huge Navigator ZNF613 [HugePedia]
snp3D : Map Gene to Disease79898
BioCentury BCIQZNF613
ClinGenZNF613
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79898
Chemical/Pharm GKB GenePA134937067
Clinical trialZNF613
Miscellaneous
canSAR (ICR)ZNF613 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF613
EVEXZNF613
GoPubMedZNF613
iHOPZNF613
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:53 CEST 2017

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