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ZNF616 (zinc finger protein 616)

Identity

Alias_symbol (synonym)MGC45556
Other alias-
HGNC (Hugo) ZNF616
LocusID (NCBI) 90317
Atlas_Id 76284
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52113091 and ends at 52139938 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFX1 (9p13.3) / ZNF616 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF616   28062
Cards
Entrez_Gene (NCBI)ZNF616  90317  zinc finger protein 616
Aliases
GeneCards (Weizmann)ZNF616
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:52113091-52139938 [Contig_View]  ZNF616 [Vega]
TCGA cBioPortalZNF616
AceView (NCBI)ZNF616
Genatlas (Paris)ZNF616
WikiGenes90317
SOURCE (Princeton)ZNF616
Genetics Home Reference (NIH)ZNF616
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF616  -     chr19:52113091-52139938 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF616  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF616 - 19q13.41 [CytoView hg19]  ZNF616 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF616 [Mapview hg19]  ZNF616 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025434 AK092266 AL832969 BC032805 BC033199
RefSeq transcript (Entrez)NM_178523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF616
Cluster EST : UnigeneHs.731969 [ NCBI ]
CGAP (NCI)Hs.731969
Gene ExpressionZNF616 [ NCBI-GEO ]   ZNF616 [ EBI - ARRAY_EXPRESS ]   ZNF616 [ SEEK ]   ZNF616 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF616 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90317
GTEX Portal (Tissue expression)ZNF616
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08AN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08AN1
Splice isoforms : SwissVarQ08AN1
PhosPhoSitePlusQ08AN1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF616
DMDM Disease mutations90317
Blocks (Seattle)ZNF616
SuperfamilyQ08AN1
Peptide AtlasQ08AN1
HPRD15876
IPIIPI00439615   IPI00797674   IPI00743392   
Protein Interaction databases
DIP (DOE-UCLA)Q08AN1
IntAct (EBI)Q08AN1
BioGRIDZNF616
STRING (EMBL)ZNF616
ZODIACZNF616
Ontologies - Pathways
QuickGOQ08AN1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF616
Atlas of Cancer Signalling NetworkZNF616
Wikipedia pathwaysZNF616
Orthology - Evolution
OrthoDB90317
Phylogenetic Trees/Animal Genes : TreeFamZNF616
HOVERGENQ08AN1
HOGENOMQ08AN1
Homologs : HomoloGeneZNF616
Homology/Alignments : Family Browser (UCSC)ZNF616
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF616 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF616
dbVarZNF616
ClinVarZNF616
1000_GenomesZNF616 
Exome Variant ServerZNF616
ExAC (Exome Aggregation Consortium)ZNF616 (select the gene name)
Genetic variants : HAPMAP90317
Genomic Variants (DGV)ZNF616 [DGVbeta]
DECIPHERZNF616 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF616 
Mutations
ICGC Data PortalZNF616 
TCGA Data PortalZNF616 
Broad Tumor PortalZNF616
OASIS PortalZNF616 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF616  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF616
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF616
DgiDB (Drug Gene Interaction Database)ZNF616
DoCM (Curated mutations)ZNF616 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF616 (select a term)
intoGenZNF616
Cancer3DZNF616(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF616
Genetic Testing Registry ZNF616
NextProtQ08AN1 [Medical]
TSGene90317
GENETestsZNF616
Target ValidationZNF616
Huge Navigator ZNF616 [HugePedia]
snp3D : Map Gene to Disease90317
BioCentury BCIQZNF616
ClinGenZNF616
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90317
Chemical/Pharm GKB GenePA134978923
Clinical trialZNF616
Miscellaneous
canSAR (ICR)ZNF616 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF616
EVEXZNF616
GoPubMedZNF616
iHOPZNF616
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:54 CEST 2017

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