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ZNF618 (zinc finger protein 618)

Identity

Alias_symbol (synonym)KIAA1952
NEDD10
Other aliasFP13169
HGNC (Hugo) ZNF618
LocusID (NCBI) 114991
Atlas_Id 76285
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113876282 and ends at 114056595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF618 (9q32) / MTAP (9p21.3)ZNF618 (9q32) / PARP4 (13q12.12)ZNF618 (9q32) / SUSD1 (9q31.3)
ZNF618 (9q32) / ZNF618 (9q32)ZNF618 SUSD1ZNF618 PARP4
ZNF618 MTAP

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF618   29416
Cards
Entrez_Gene (NCBI)ZNF618  114991  zinc finger protein 618
AliasesFP13169; NEDD10
GeneCards (Weizmann)ZNF618
Ensembl hg19 (Hinxton)ENSG00000157657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157657 [Gene_View]  chr9:113876282-114056595 [Contig_View]  ZNF618 [Vega]
ICGC DataPortalENSG00000157657
TCGA cBioPortalZNF618
AceView (NCBI)ZNF618
Genatlas (Paris)ZNF618
WikiGenes114991
SOURCE (Princeton)ZNF618
Genetics Home Reference (NIH)ZNF618
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF618  -     chr9:113876282-114056595 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF618  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblZNF618 - 9q32 [CytoView hg19]  ZNF618 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIZNF618 [Mapview hg19]  ZNF618 [Mapview hg38]
OMIM617077   
Gene and transcription
Genbank (Entrez)AB075832 AF147430 AF495724 AJ420454 AK126896
RefSeq transcript (Entrez)NM_001040063 NM_001318040 NM_001318041 NM_001318042 NM_133374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF618
Cluster EST : UnigeneHs.349208 [ NCBI ]
CGAP (NCI)Hs.349208
Alternative Splicing GalleryENSG00000157657
Gene ExpressionZNF618 [ NCBI-GEO ]   ZNF618 [ EBI - ARRAY_EXPRESS ]   ZNF618 [ SEEK ]   ZNF618 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF618 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114991
GTEX Portal (Tissue expression)ZNF618
Human Protein AtlasENSG00000157657-ZNF618 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7W0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7W0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7W0
Splice isoforms : SwissVarQ5T7W0
PhosPhoSitePlusQ5T7W0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)RNaseH-like_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF618
DMDM Disease mutations114991
Blocks (Seattle)ZNF618
SuperfamilyQ5T7W0
Human Protein Atlas [tissue]ENSG00000157657-ZNF618 [tissue]
Peptide AtlasQ5T7W0
HPRD18719
IPIIPI00845286   IPI00844490   IPI00845412   IPI00847641   IPI00514432   IPI00433705   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7W0
IntAct (EBI)Q5T7W0
FunCoupENSG00000157657
BioGRIDZNF618
STRING (EMBL)ZNF618
ZODIACZNF618
Ontologies - Pathways
QuickGOQ5T7W0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF618
Atlas of Cancer Signalling NetworkZNF618
Wikipedia pathwaysZNF618
Orthology - Evolution
OrthoDB114991
GeneTree (enSembl)ENSG00000157657
Phylogenetic Trees/Animal Genes : TreeFamZNF618
HOVERGENQ5T7W0
HOGENOMQ5T7W0
Homologs : HomoloGeneZNF618
Homology/Alignments : Family Browser (UCSC)ZNF618
Gene fusions - Rearrangements
Fusion: TCGAZNF618 SUSD1
Fusion: TCGAZNF618 PARP4
Fusion: TCGAZNF618 MTAP
Fusion: Tumor Portal ZNF618
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF618 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF618
dbVarZNF618
ClinVarZNF618
1000_GenomesZNF618 
Exome Variant ServerZNF618
ExAC (Exome Aggregation Consortium)ENSG00000157657
GNOMAD BrowserENSG00000157657
Genetic variants : HAPMAP114991
Genomic Variants (DGV)ZNF618 [DGVbeta]
DECIPHERZNF618 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF618 
Mutations
ICGC Data PortalZNF618 
TCGA Data PortalZNF618 
Broad Tumor PortalZNF618
OASIS PortalZNF618 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF618  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF618
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF618
DgiDB (Drug Gene Interaction Database)ZNF618
DoCM (Curated mutations)ZNF618 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF618 (select a term)
intoGenZNF618
Cancer3DZNF618(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617077   
Orphanet
MedgenZNF618
Genetic Testing Registry ZNF618
NextProtQ5T7W0 [Medical]
TSGene114991
GENETestsZNF618
Target ValidationZNF618
Huge Navigator ZNF618 [HugePedia]
snp3D : Map Gene to Disease114991
BioCentury BCIQZNF618
ClinGenZNF618
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114991
Chemical/Pharm GKB GenePA31532
Clinical trialZNF618
Miscellaneous
canSAR (ICR)ZNF618 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF618
EVEXZNF618
GoPubMedZNF618
iHOPZNF618
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:32 CET 2017

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