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ZNF619 (zinc finger protein 619)

Identity

Alias_symbol (synonym)FLJ90764
Other alias-
HGNC (Hugo) ZNF619
LocusID (NCBI) 285267
Atlas_Id 76286
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 40477113 and ends at 40490237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF619 (3p22.1) / ADAMTS9 (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF619   26910
Cards
Entrez_Gene (NCBI)ZNF619  285267  zinc finger protein 619
Aliases
GeneCards (Weizmann)ZNF619
Ensembl hg19 (Hinxton)ENSG00000177873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177873 [Gene_View]  chr3:40477113-40490237 [Contig_View]  ZNF619 [Vega]
ICGC DataPortalENSG00000177873
TCGA cBioPortalZNF619
AceView (NCBI)ZNF619
Genatlas (Paris)ZNF619
WikiGenes285267
SOURCE (Princeton)ZNF619
Genetics Home Reference (NIH)ZNF619
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF619  -     chr3:40477113-40490237 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF619  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF619 - 3p22.1 [CytoView hg19]  ZNF619 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF619 [Mapview hg19]  ZNF619 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075245 AK304139 AK304741 AK304793 BC117169
RefSeq transcript (Entrez)NM_001145082 NM_001145083 NM_001145093 NM_001145094 NM_173656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF619
Cluster EST : UnigeneHs.407159 [ NCBI ]
CGAP (NCI)Hs.407159
Alternative Splicing GalleryENSG00000177873
Gene ExpressionZNF619 [ NCBI-GEO ]   ZNF619 [ EBI - ARRAY_EXPRESS ]   ZNF619 [ SEEK ]   ZNF619 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF619 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285267
GTEX Portal (Tissue expression)ZNF619
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2I2
Splice isoforms : SwissVarQ8N2I2
PhosPhoSitePlusQ8N2I2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF619
DMDM Disease mutations285267
Blocks (Seattle)ZNF619
SuperfamilyQ8N2I2
Human Protein AtlasENSG00000177873
Peptide AtlasQ8N2I2
HPRD15877
IPIIPI00872690   IPI00910306   IPI00910999   IPI00984314   IPI00166410   IPI00922247   IPI00793384   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2I2
IntAct (EBI)Q8N2I2
FunCoupENSG00000177873
BioGRIDZNF619
STRING (EMBL)ZNF619
ZODIACZNF619
Ontologies - Pathways
QuickGOQ8N2I2
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF619
Atlas of Cancer Signalling NetworkZNF619
Wikipedia pathwaysZNF619
Orthology - Evolution
OrthoDB285267
GeneTree (enSembl)ENSG00000177873
Phylogenetic Trees/Animal Genes : TreeFamZNF619
HOVERGENQ8N2I2
HOGENOMQ8N2I2
Homologs : HomoloGeneZNF619
Homology/Alignments : Family Browser (UCSC)ZNF619
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF619 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF619
dbVarZNF619
ClinVarZNF619
1000_GenomesZNF619 
Exome Variant ServerZNF619
ExAC (Exome Aggregation Consortium)ZNF619 (select the gene name)
Genetic variants : HAPMAP285267
Genomic Variants (DGV)ZNF619 [DGVbeta]
DECIPHERZNF619 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF619 
Mutations
ICGC Data PortalZNF619 
TCGA Data PortalZNF619 
Broad Tumor PortalZNF619
OASIS PortalZNF619 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF619  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF619
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF619
DgiDB (Drug Gene Interaction Database)ZNF619
DoCM (Curated mutations)ZNF619 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF619 (select a term)
intoGenZNF619
Cancer3DZNF619(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF619
Genetic Testing Registry ZNF619
NextProtQ8N2I2 [Medical]
TSGene285267
GENETestsZNF619
Target ValidationZNF619
Huge Navigator ZNF619 [HugePedia]
snp3D : Map Gene to Disease285267
BioCentury BCIQZNF619
ClinGenZNF619
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285267
Chemical/Pharm GKB GenePA134889198
Clinical trialZNF619
Miscellaneous
canSAR (ICR)ZNF619 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF619
EVEXZNF619
GoPubMedZNF619
iHOPZNF619
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:04 CEST 2017

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