Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF620 (zinc finger protein 620)

Identity

Alias_symbol (synonym)MGC50836
Other alias-
HGNC (Hugo) ZNF620
LocusID (NCBI) 253639
Atlas_Id 53774
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 40506039 and ends at 40518221 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF620   28742
Cards
Entrez_Gene (NCBI)ZNF620  253639  zinc finger protein 620
Aliases
GeneCards (Weizmann)ZNF620
Ensembl hg19 (Hinxton)ENSG00000177842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177842 [Gene_View]  chr3:40506039-40518221 [Contig_View]  ZNF620 [Vega]
ICGC DataPortalENSG00000177842
TCGA cBioPortalZNF620
AceView (NCBI)ZNF620
Genatlas (Paris)ZNF620
WikiGenes253639
SOURCE (Princeton)ZNF620
Genetics Home Reference (NIH)ZNF620
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF620  -     chr3:40506039-40518221 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF620  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF620 - 3p22.1 [CytoView hg19]  ZNF620 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF620 [Mapview hg19]  ZNF620 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093599 AK131232 BC044953 BC148386 BC153008
RefSeq transcript (Entrez)NM_001256167 NM_001256168 NM_175888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF620
Cluster EST : UnigeneHs.581541 [ NCBI ]
CGAP (NCI)Hs.581541
Alternative Splicing GalleryENSG00000177842
Gene ExpressionZNF620 [ NCBI-GEO ]   ZNF620 [ EBI - ARRAY_EXPRESS ]   ZNF620 [ SEEK ]   ZNF620 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF620 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253639
GTEX Portal (Tissue expression)ZNF620
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNG0
Splice isoforms : SwissVarQ6ZNG0
PhosPhoSitePlusQ6ZNG0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF620
DMDM Disease mutations253639
Blocks (Seattle)ZNF620
SuperfamilyQ6ZNG0
Human Protein AtlasENSG00000177842
Peptide AtlasQ6ZNG0
HPRD15878
IPIIPI00166247   IPI00654765   IPI00927593   IPI00927356   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNG0
IntAct (EBI)Q6ZNG0
FunCoupENSG00000177842
BioGRIDZNF620
STRING (EMBL)ZNF620
ZODIACZNF620
Ontologies - Pathways
QuickGOQ6ZNG0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF620
Atlas of Cancer Signalling NetworkZNF620
Wikipedia pathwaysZNF620
Orthology - Evolution
OrthoDB253639
GeneTree (enSembl)ENSG00000177842
Phylogenetic Trees/Animal Genes : TreeFamZNF620
HOVERGENQ6ZNG0
HOGENOMQ6ZNG0
Homologs : HomoloGeneZNF620
Homology/Alignments : Family Browser (UCSC)ZNF620
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF620 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF620
dbVarZNF620
ClinVarZNF620
1000_GenomesZNF620 
Exome Variant ServerZNF620
ExAC (Exome Aggregation Consortium)ZNF620 (select the gene name)
Genetic variants : HAPMAP253639
Genomic Variants (DGV)ZNF620 [DGVbeta]
DECIPHERZNF620 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF620 
Mutations
ICGC Data PortalZNF620 
TCGA Data PortalZNF620 
Broad Tumor PortalZNF620
OASIS PortalZNF620 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF620  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF620
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF620
DgiDB (Drug Gene Interaction Database)ZNF620
DoCM (Curated mutations)ZNF620 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF620 (select a term)
intoGenZNF620
Cancer3DZNF620(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF620
Genetic Testing Registry ZNF620
NextProtQ6ZNG0 [Medical]
TSGene253639
GENETestsZNF620
Target ValidationZNF620
Huge Navigator ZNF620 [HugePedia]
snp3D : Map Gene to Disease253639
BioCentury BCIQZNF620
ClinGenZNF620
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253639
Chemical/Pharm GKB GenePA134942360
Clinical trialZNF620
Miscellaneous
canSAR (ICR)ZNF620 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF620
EVEXZNF620
GoPubMedZNF620
iHOPZNF620
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:39:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.