Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF621 (zinc finger protein 621)

Identity

Alias_symbol (synonym)FLJ45246
Other alias-
HGNC (Hugo) ZNF621
LocusID (NCBI) 285268
Atlas_Id 76287
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 40566369 and ends at 40581285 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF621 (3p22.1) / PIK3R4 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF621   24787
Cards
Entrez_Gene (NCBI)ZNF621  285268  zinc finger protein 621
Aliases
GeneCards (Weizmann)ZNF621
Ensembl hg19 (Hinxton)ENSG00000172888 [Gene_View]  chr3:40566369-40581285 [Contig_View]  ZNF621 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172888 [Gene_View]  chr3:40566369-40581285 [Contig_View]  ZNF621 [Vega]
ICGC DataPortalENSG00000172888
TCGA cBioPortalZNF621
AceView (NCBI)ZNF621
Genatlas (Paris)ZNF621
WikiGenes285268
SOURCE (Princeton)ZNF621
Genetics Home Reference (NIH)ZNF621
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF621  -     chr3:40566369-40581285 +  3p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF621  -     3p22.1   [Description]    (hg38-Dec_2013)
EnsemblZNF621 - 3p22.1 [CytoView hg19]  ZNF621 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF621 [Mapview hg19]  ZNF621 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074366 AK127181 BC101619 BC113415 CR749268
RefSeq transcript (Entrez)NM_001098414 NM_001287245 NM_198484
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)ZNF621
Cluster EST : UnigeneHs.19977 [ NCBI ]
CGAP (NCI)Hs.19977
Alternative Splicing GalleryENSG00000172888
Gene ExpressionZNF621 [ NCBI-GEO ]   ZNF621 [ EBI - ARRAY_EXPRESS ]   ZNF621 [ SEEK ]   ZNF621 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF621 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285268
GTEX Portal (Tissue expression)ZNF621
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSS3
Splice isoforms : SwissVarQ6ZSS3
PhosPhoSitePlusQ6ZSS3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF621
DMDM Disease mutations285268
Blocks (Seattle)ZNF621
SuperfamilyQ6ZSS3
Human Protein AtlasENSG00000172888
Peptide AtlasQ6ZSS3
HPRD15879
IPIIPI00413350   IPI00291584   IPI00926089   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSS3
IntAct (EBI)Q6ZSS3
FunCoupENSG00000172888
BioGRIDZNF621
STRING (EMBL)ZNF621
ZODIACZNF621
Ontologies - Pathways
QuickGOQ6ZSS3
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF621
Atlas of Cancer Signalling NetworkZNF621
Wikipedia pathwaysZNF621
Orthology - Evolution
OrthoDB285268
GeneTree (enSembl)ENSG00000172888
Phylogenetic Trees/Animal Genes : TreeFamZNF621
HOVERGENQ6ZSS3
HOGENOMQ6ZSS3
Homologs : HomoloGeneZNF621
Homology/Alignments : Family Browser (UCSC)ZNF621
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF621 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF621
dbVarZNF621
ClinVarZNF621
1000_GenomesZNF621 
Exome Variant ServerZNF621
ExAC (Exome Aggregation Consortium)ZNF621 (select the gene name)
Genetic variants : HAPMAP285268
Genomic Variants (DGV)ZNF621 [DGVbeta]
DECIPHER (Syndromes)3:40566369-40581285  ENSG00000172888
CONAN: Copy Number AnalysisZNF621 
Mutations
ICGC Data PortalZNF621 
TCGA Data PortalZNF621 
Broad Tumor PortalZNF621
OASIS PortalZNF621 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF621  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF621
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF621
DgiDB (Drug Gene Interaction Database)ZNF621
DoCM (Curated mutations)ZNF621 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF621 (select a term)
intoGenZNF621
Cancer3DZNF621(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF621
Genetic Testing Registry ZNF621
NextProtQ6ZSS3 [Medical]
TSGene285268
GENETestsZNF621
Huge Navigator ZNF621 [HugePedia]
snp3D : Map Gene to Disease285268
BioCentury BCIQZNF621
ClinGenZNF621
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285268
Chemical/Pharm GKB GenePA134982950
Clinical trialZNF621
Miscellaneous
canSAR (ICR)ZNF621 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF621
EVEXZNF621
GoPubMedZNF621
iHOPZNF621
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:30 CET 2017

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