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ZNF622 (zinc finger protein 622)

Identity

Alias (NCBI)ZPR9
HGNC (Hugo) ZNF622
HGNC Alias symbMGC2485
MGC17552
ZPR9
LocusID (NCBI) 90441
Atlas_Id 56258
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 16451519 and ends at 16465800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPEG (2q35) / ZNF622 (5p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF622   30958
Cards
Entrez_Gene (NCBI)ZNF622    zinc finger protein 622
AliasesZPR9
GeneCards (Weizmann)ZNF622
Ensembl hg19 (Hinxton)ENSG00000173545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173545 [Gene_View]  ENSG00000173545 [Sequence]  chr5:16451519-16465800 [Contig_View]  ZNF622 [Vega]
ICGC DataPortalENSG00000173545
TCGA cBioPortalZNF622
AceView (NCBI)ZNF622
Genatlas (Paris)ZNF622
SOURCE (Princeton)ZNF622
Genetics Home Reference (NIH)ZNF622
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF622  -     chr5:16451519-16465800 -  5p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF622  -     5p15.1   [Description]    (hg19-Feb_2009)
GoldenPathZNF622 - 5p15.1 [CytoView hg19]  ZNF622 - 5p15.1 [CytoView hg38]
ImmunoBaseENSG00000173545
Genome Data Viewer NCBIZNF622 [Mapview hg19]  
OMIM608694   
Gene and transcription
Genbank (Entrez)AY046059 BC008752 BC010545
RefSeq transcript (Entrez)NM_033414
Consensus coding sequences : CCDS (NCBI)ZNF622
Gene ExpressionZNF622 [ NCBI-GEO ]   ZNF622 [ EBI - ARRAY_EXPRESS ]   ZNF622 [ SEEK ]   ZNF622 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF622 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF622 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90441
GTEX Portal (Tissue expression)ZNF622
Human Protein AtlasENSG00000173545-ZNF622 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969S3
PhosPhoSitePlusQ969S3
Domains : Interpro (EBI)Matrin/U1-like-C_Znf_C2H2    ZN622/Rei1/Reh1_Znf-C2H2    Znf622/Rei1/Reh1    Znf_C2H2_jaz    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2_2 (PF12756)    zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12756    pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF622
PDB (RSDB)6LQM    6LSR   
PDB Europe6LQM    6LSR   
PDB (PDBSum)6LQM    6LSR   
PDB (IMB)6LQM    6LSR   
Structural Biology KnowledgeBase6LQM    6LSR   
SCOP (Structural Classification of Proteins)6LQM    6LSR   
CATH (Classification of proteins structures)6LQM    6LSR   
SuperfamilyQ969S3
AlphaFold pdb e-kbQ969S3   
Human Protein Atlas [tissue]ENSG00000173545-ZNF622 [tissue]
HPRD12278
Protein Interaction databases
DIP (DOE-UCLA)Q969S3
IntAct (EBI)Q969S3
BioGRIDZNF622
STRING (EMBL)ZNF622
ZODIACZNF622
Ontologies - Pathways
QuickGOQ969S3
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nucleolus  Golgi apparatus  cytosol  zinc ion binding  intrinsic apoptotic signaling pathway in response to oxidative stress  preribosome, large subunit precursor  positive regulation of kinase activity  ribosomal large subunit biogenesis  positive regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of JNK cascade  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nucleolus  Golgi apparatus  cytosol  zinc ion binding  intrinsic apoptotic signaling pathway in response to oxidative stress  preribosome, large subunit precursor  positive regulation of kinase activity  ribosomal large subunit biogenesis  positive regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of JNK cascade  
NDEx NetworkZNF622
Atlas of Cancer Signalling NetworkZNF622
Wikipedia pathwaysZNF622
Orthology - Evolution
OrthoDB90441
GeneTree (enSembl)ENSG00000173545
Phylogenetic Trees/Animal Genes : TreeFamZNF622
Homologs : HomoloGeneZNF622
Homology/Alignments : Family Browser (UCSC)ZNF622
Gene fusions - Rearrangements
Fusion : QuiverZNF622
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF622 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF622
dbVarZNF622
ClinVarZNF622
MonarchZNF622
1000_GenomesZNF622 
Exome Variant ServerZNF622
GNOMAD BrowserENSG00000173545
Varsome BrowserZNF622
ACMGZNF622 variants
VarityQ969S3
Genomic Variants (DGV)ZNF622 [DGVbeta]
DECIPHERZNF622 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF622 
Mutations
ICGC Data PortalZNF622 
TCGA Data PortalZNF622 
Broad Tumor PortalZNF622
OASIS PortalZNF622 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF622  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF622
Mutations and Diseases : HGMDZNF622
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF622
DgiDB (Drug Gene Interaction Database)ZNF622
DoCM (Curated mutations)ZNF622
CIViC (Clinical Interpretations of Variants in Cancer)ZNF622
Cancer3DZNF622
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608694   
Orphanet
DisGeNETZNF622
MedgenZNF622
Genetic Testing Registry ZNF622
NextProtQ969S3 [Medical]
GENETestsZNF622
Target ValidationZNF622
Huge Navigator ZNF622 [HugePedia]
ClinGenZNF622
Clinical trials, drugs, therapy
MyCancerGenomeZNF622
Protein Interactions : CTDZNF622
Pharm GKB GenePA134992557
PharosQ969S3
Clinical trialZNF622
Miscellaneous
canSAR (ICR)ZNF622
HarmonizomeZNF622
DataMed IndexZNF622
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF622
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:39:23 CEST 2021

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