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ZNF622 (zinc finger protein 622)

Identity

Alias_symbol (synonym)MGC2485
MGC17552
ZPR9
Other alias
HGNC (Hugo) ZNF622
LocusID (NCBI) 90441
Atlas_Id 56258
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 16451519 and ends at 16465785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPEG (2q35) / ZNF622 (5p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF622   30958
Cards
Entrez_Gene (NCBI)ZNF622  90441  zinc finger protein 622
AliasesZPR9
GeneCards (Weizmann)ZNF622
Ensembl hg19 (Hinxton)ENSG00000173545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173545 [Gene_View]  chr5:16451519-16465785 [Contig_View]  ZNF622 [Vega]
ICGC DataPortalENSG00000173545
TCGA cBioPortalZNF622
AceView (NCBI)ZNF622
Genatlas (Paris)ZNF622
WikiGenes90441
SOURCE (Princeton)ZNF622
Genetics Home Reference (NIH)ZNF622
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF622  -     chr5:16451519-16465785 -  5p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF622  -     5p15.1   [Description]    (hg19-Feb_2009)
EnsemblZNF622 - 5p15.1 [CytoView hg19]  ZNF622 - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBIZNF622 [Mapview hg19]  ZNF622 [Mapview hg38]
OMIM608694   
Gene and transcription
Genbank (Entrez)AY046059 BC008752 BC010545
RefSeq transcript (Entrez)NM_033414
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF622
Cluster EST : UnigeneHs.60300 [ NCBI ]
CGAP (NCI)Hs.60300
Alternative Splicing GalleryENSG00000173545
Gene ExpressionZNF622 [ NCBI-GEO ]   ZNF622 [ EBI - ARRAY_EXPRESS ]   ZNF622 [ SEEK ]   ZNF622 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF622 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90441
GTEX Portal (Tissue expression)ZNF622
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969S3
Splice isoforms : SwissVarQ969S3
PhosPhoSitePlusQ969S3
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_2 (PF12756)    zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12756    pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF622
DMDM Disease mutations90441
Blocks (Seattle)ZNF622
SuperfamilyQ969S3
Human Protein AtlasENSG00000173545
Peptide AtlasQ969S3
HPRD12278
IPIIPI00056499   
Protein Interaction databases
DIP (DOE-UCLA)Q969S3
IntAct (EBI)Q969S3
FunCoupENSG00000173545
BioGRIDZNF622
STRING (EMBL)ZNF622
ZODIACZNF622
Ontologies - Pathways
QuickGOQ969S3
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  Golgi apparatus  cytosol  zinc ion binding  intrinsic apoptotic signaling pathway in response to oxidative stress  cytosolic large ribosomal subunit  preribosome, large subunit precursor  positive regulation of kinase activity  ribosomal large subunit biogenesis  positive regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of JNK cascade  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  Golgi apparatus  cytosol  zinc ion binding  intrinsic apoptotic signaling pathway in response to oxidative stress  cytosolic large ribosomal subunit  preribosome, large subunit precursor  positive regulation of kinase activity  ribosomal large subunit biogenesis  positive regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of JNK cascade  
NDEx NetworkZNF622
Atlas of Cancer Signalling NetworkZNF622
Wikipedia pathwaysZNF622
Orthology - Evolution
OrthoDB90441
GeneTree (enSembl)ENSG00000173545
Phylogenetic Trees/Animal Genes : TreeFamZNF622
HOVERGENQ969S3
HOGENOMQ969S3
Homologs : HomoloGeneZNF622
Homology/Alignments : Family Browser (UCSC)ZNF622
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF622 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF622
dbVarZNF622
ClinVarZNF622
1000_GenomesZNF622 
Exome Variant ServerZNF622
ExAC (Exome Aggregation Consortium)ZNF622 (select the gene name)
Genetic variants : HAPMAP90441
Genomic Variants (DGV)ZNF622 [DGVbeta]
DECIPHERZNF622 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF622 
Mutations
ICGC Data PortalZNF622 
TCGA Data PortalZNF622 
Broad Tumor PortalZNF622
OASIS PortalZNF622 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF622  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF622
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF622
DgiDB (Drug Gene Interaction Database)ZNF622
DoCM (Curated mutations)ZNF622 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF622 (select a term)
intoGenZNF622
Cancer3DZNF622(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608694   
Orphanet
MedgenZNF622
Genetic Testing Registry ZNF622
NextProtQ969S3 [Medical]
TSGene90441
GENETestsZNF622
Target ValidationZNF622
Huge Navigator ZNF622 [HugePedia]
snp3D : Map Gene to Disease90441
BioCentury BCIQZNF622
ClinGenZNF622
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90441
Chemical/Pharm GKB GenePA134992557
Clinical trialZNF622
Miscellaneous
canSAR (ICR)ZNF622 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF622
EVEXZNF622
GoPubMedZNF622
iHOPZNF622
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:53 CEST 2017

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