Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF623 (zinc finger protein 623)

Identity

Alias_symbol (synonym)KIAA0628
Other alias-
HGNC (Hugo) ZNF623
LocusID (NCBI) 9831
Atlas_Id 76289
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143636162 and ends at 143653730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MROH1 (8q24.3) / ZNF623 (8q24.3)ZNF623 (8q24.3) / ZNF623 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF623   29084
Cards
Entrez_Gene (NCBI)ZNF623  9831  zinc finger protein 623
Aliases
GeneCards (Weizmann)ZNF623
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:143636162-143653730 [Contig_View]  ZNF623 [Vega]
TCGA cBioPortalZNF623
AceView (NCBI)ZNF623
Genatlas (Paris)ZNF623
WikiGenes9831
SOURCE (Princeton)ZNF623
Genetics Home Reference (NIH)ZNF623
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF623  -     chr8:143636162-143653730 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF623  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblZNF623 - 8q24.3 [CytoView hg19]  ZNF623 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF623 [Mapview hg19]  ZNF623 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB014528 AK294695 AW161801 BC067516 BC067517
RefSeq transcript (Entrez)NM_001082480 NM_001261843 NM_014789
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187571
Consensus coding sequences : CCDS (NCBI)ZNF623
Cluster EST : UnigeneHs.745418 [ NCBI ]
CGAP (NCI)Hs.745418
Gene ExpressionZNF623 [ NCBI-GEO ]   ZNF623 [ EBI - ARRAY_EXPRESS ]   ZNF623 [ SEEK ]   ZNF623 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF623 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9831
GTEX Portal (Tissue expression)ZNF623
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75123   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75123  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75123
Splice isoforms : SwissVarO75123
PhosPhoSitePlusO75123
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF623
DMDM Disease mutations9831
Blocks (Seattle)ZNF623
SuperfamilyO75123
Peptide AtlasO75123
HPRD18358
IPIIPI00006466   IPI00908573   IPI00829987   
Protein Interaction databases
DIP (DOE-UCLA)O75123
IntAct (EBI)O75123
BioGRIDZNF623
STRING (EMBL)ZNF623
ZODIACZNF623
Ontologies - Pathways
QuickGOO75123
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF623
Atlas of Cancer Signalling NetworkZNF623
Wikipedia pathwaysZNF623
Orthology - Evolution
OrthoDB9831
Phylogenetic Trees/Animal Genes : TreeFamZNF623
HOVERGENO75123
HOGENOMO75123
Homologs : HomoloGeneZNF623
Homology/Alignments : Family Browser (UCSC)ZNF623
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF623 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF623
dbVarZNF623
ClinVarZNF623
1000_GenomesZNF623 
Exome Variant ServerZNF623
ExAC (Exome Aggregation Consortium)ZNF623 (select the gene name)
Genetic variants : HAPMAP9831
Genomic Variants (DGV)ZNF623 [DGVbeta]
DECIPHERZNF623 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF623 
Mutations
ICGC Data PortalZNF623 
TCGA Data PortalZNF623 
Broad Tumor PortalZNF623
OASIS PortalZNF623 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF623  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF623
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF623
DgiDB (Drug Gene Interaction Database)ZNF623
DoCM (Curated mutations)ZNF623 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF623 (select a term)
intoGenZNF623
Cancer3DZNF623(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF623
Genetic Testing Registry ZNF623
NextProtO75123 [Medical]
TSGene9831
GENETestsZNF623
Target ValidationZNF623
Huge Navigator ZNF623 [HugePedia]
snp3D : Map Gene to Disease9831
BioCentury BCIQZNF623
ClinGenZNF623
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9831
Chemical/Pharm GKB GenePA134969295
Clinical trialZNF623
Miscellaneous
canSAR (ICR)ZNF623 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF623
EVEXZNF623
GoPubMedZNF623
iHOPZNF623
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.