Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF625 (zinc finger protein 625)

Identity

Other alias-
HGNC (Hugo) ZNF625
LocusID (NCBI) 90589
Atlas_Id 76291
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12144894 and ends at 12156731 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF625   30571
Cards
Entrez_Gene (NCBI)ZNF625  90589  zinc finger protein 625
Aliases
GeneCards (Weizmann)ZNF625
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:12144894-12156731 [Contig_View]  ZNF625 [Vega]
TCGA cBioPortalZNF625
AceView (NCBI)ZNF625
Genatlas (Paris)ZNF625
WikiGenes90589
SOURCE (Princeton)ZNF625
Genetics Home Reference (NIH)ZNF625
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF625  -     chr19:12144894-12156731 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF625  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF625 - 19p13.2 [CytoView hg19]  ZNF625 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF625 [Mapview hg19]  ZNF625 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007868 BC101589 BC101591 BC143563 DB071985
RefSeq transcript (Entrez)NM_145233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF625
Cluster EST : UnigeneHs.732736 [ NCBI ]
CGAP (NCI)Hs.732736
Gene ExpressionZNF625 [ NCBI-GEO ]   ZNF625 [ EBI - ARRAY_EXPRESS ]   ZNF625 [ SEEK ]   ZNF625 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF625 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90589
GTEX Portal (Tissue expression)ZNF625
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I27
Splice isoforms : SwissVarQ96I27
PhosPhoSitePlusQ96I27
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF625
DMDM Disease mutations90589
Blocks (Seattle)ZNF625
SuperfamilyQ96I27
Peptide AtlasQ96I27
HPRD15880
IPIIPI00925693   IPI00644616   IPI00924883   
Protein Interaction databases
DIP (DOE-UCLA)Q96I27
IntAct (EBI)Q96I27
BioGRIDZNF625
STRING (EMBL)ZNF625
ZODIACZNF625
Ontologies - Pathways
QuickGOQ96I27
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF625
Atlas of Cancer Signalling NetworkZNF625
Wikipedia pathwaysZNF625
Orthology - Evolution
OrthoDB90589
Phylogenetic Trees/Animal Genes : TreeFamZNF625
HOVERGENQ96I27
HOGENOMQ96I27
Homologs : HomoloGeneZNF625
Homology/Alignments : Family Browser (UCSC)ZNF625
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF625 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF625
dbVarZNF625
ClinVarZNF625
1000_GenomesZNF625 
Exome Variant ServerZNF625
ExAC (Exome Aggregation Consortium)ZNF625 (select the gene name)
Genetic variants : HAPMAP90589
Genomic Variants (DGV)ZNF625 [DGVbeta]
DECIPHERZNF625 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF625 
Mutations
ICGC Data PortalZNF625 
TCGA Data PortalZNF625 
Broad Tumor PortalZNF625
OASIS PortalZNF625 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF625  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF625
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF625
DgiDB (Drug Gene Interaction Database)ZNF625
DoCM (Curated mutations)ZNF625 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF625 (select a term)
intoGenZNF625
Cancer3DZNF625(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF625
Genetic Testing Registry ZNF625
NextProtQ96I27 [Medical]
TSGene90589
GENETestsZNF625
Target ValidationZNF625
Huge Navigator ZNF625 [HugePedia]
snp3D : Map Gene to Disease90589
BioCentury BCIQZNF625
ClinGenZNF625
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90589
Chemical/Pharm GKB GenePA134911932
Clinical trialZNF625
Miscellaneous
canSAR (ICR)ZNF625 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF625
EVEXZNF625
GoPubMedZNF625
iHOPZNF625
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.