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ZNF627 (zinc finger protein 627)

Identity

Alias_symbol (synonym)FLJ90365
Other alias-
HGNC (Hugo) ZNF627
LocusID (NCBI) 199692
Atlas_Id 76294
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11597420 and ends at 11619159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF236 (18q23) / ZNF627 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF627   30570
Cards
Entrez_Gene (NCBI)ZNF627  199692  zinc finger protein 627
Aliases
GeneCards (Weizmann)ZNF627
Ensembl hg19 (Hinxton)ENSG00000198551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198551 [Gene_View]  chr19:11597420-11619159 [Contig_View]  ZNF627 [Vega]
ICGC DataPortalENSG00000198551
TCGA cBioPortalZNF627
AceView (NCBI)ZNF627
Genatlas (Paris)ZNF627
WikiGenes199692
SOURCE (Princeton)ZNF627
Genetics Home Reference (NIH)ZNF627
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF627  -     chr19:11597420-11619159 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF627  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF627 - 19p13.2 [CytoView hg19]  ZNF627 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF627 [Mapview hg19]  ZNF627 [Mapview hg38]
OMIM612248   
Gene and transcription
Genbank (Entrez)AF024694 AK074846 AK075063 AK095639 BC006279
RefSeq transcript (Entrez)NM_001290083 NM_001290084 NM_001290085 NM_145295
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF627
Cluster EST : UnigeneHs.526665 [ NCBI ]
CGAP (NCI)Hs.526665
Alternative Splicing GalleryENSG00000198551
Gene ExpressionZNF627 [ NCBI-GEO ]   ZNF627 [ EBI - ARRAY_EXPRESS ]   ZNF627 [ SEEK ]   ZNF627 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF627 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199692
GTEX Portal (Tissue expression)ZNF627
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L945   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L945  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L945
Splice isoforms : SwissVarQ7L945
PhosPhoSitePlusQ7L945
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF627
DMDM Disease mutations199692
Blocks (Seattle)ZNF627
SuperfamilyQ7L945
Human Protein AtlasENSG00000198551
Peptide AtlasQ7L945
HPRD18360
IPIIPI00029023   IPI00385918   
Protein Interaction databases
DIP (DOE-UCLA)Q7L945
IntAct (EBI)Q7L945
FunCoupENSG00000198551
BioGRIDZNF627
STRING (EMBL)ZNF627
ZODIACZNF627
Ontologies - Pathways
QuickGOQ7L945
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF627
Atlas of Cancer Signalling NetworkZNF627
Wikipedia pathwaysZNF627
Orthology - Evolution
OrthoDB199692
GeneTree (enSembl)ENSG00000198551
Phylogenetic Trees/Animal Genes : TreeFamZNF627
HOVERGENQ7L945
HOGENOMQ7L945
Homologs : HomoloGeneZNF627
Homology/Alignments : Family Browser (UCSC)ZNF627
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF627 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF627
dbVarZNF627
ClinVarZNF627
1000_GenomesZNF627 
Exome Variant ServerZNF627
ExAC (Exome Aggregation Consortium)ZNF627 (select the gene name)
Genetic variants : HAPMAP199692
Genomic Variants (DGV)ZNF627 [DGVbeta]
DECIPHERZNF627 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF627 
Mutations
ICGC Data PortalZNF627 
TCGA Data PortalZNF627 
Broad Tumor PortalZNF627
OASIS PortalZNF627 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF627  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF627
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF627
DgiDB (Drug Gene Interaction Database)ZNF627
DoCM (Curated mutations)ZNF627 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF627 (select a term)
intoGenZNF627
Cancer3DZNF627(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612248   
Orphanet
MedgenZNF627
Genetic Testing Registry ZNF627
NextProtQ7L945 [Medical]
TSGene199692
GENETestsZNF627
Target ValidationZNF627
Huge Navigator ZNF627 [HugePedia]
snp3D : Map Gene to Disease199692
BioCentury BCIQZNF627
ClinGenZNF627
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199692
Chemical/Pharm GKB GenePA134903355
Clinical trialZNF627
Miscellaneous
canSAR (ICR)ZNF627 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF627
EVEXZNF627
GoPubMedZNF627
iHOPZNF627
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:56 CEST 2017

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