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ZNF628 (zinc finger protein 628)

Identity

Alias_symbol (synonym)ZEC
Zfp628
Other alias
HGNC (Hugo) ZNF628
LocusID (NCBI) 89887
Atlas_Id 76295
Location 19q13.42 &nbsr;[Liok(to chromosome band 19q13]
Location_base_pair Starts at 55476332 and ends at 55484487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF628   28054
Cards
Entrez_Gene (NCBI)ZNF628.nbsp?&Nbsp;89887  zinc finger protein 628
AliasesZEC; Zfp628
GeneCards (Weizmann)ZNF628
Ensembl hg19 (Hinxton)ENSG00000197483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197483 [Gene_View]  chr19:55476332-55484487 [Contig_View]  ZNF628 [Vega]
ICGC DataPortalENSG00000197483
TCGA cBioPortalZNF628
AceView (NCBI)ZNF628
Genatlas (Paris)ZNF628
WikiGenes89887
SOURCE (Princeton)ZNF628
Genetics Home Reference (NIH)ZNF628
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF628  -     chr19:55476332-55484487 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF628  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF628 - 19q13.42 [CytoView hg19]  ZNF628 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF628 [Mapview hg19]  ZNF628 [Mapview hg38]
OMIM610671   
Gene and transcription
Genbank (Entrez)AF367249 BC016036 BC047332 BC089449
RefSeq transcript (Entrez)NM_033113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF628
Cluster EST : UnigeneHs.525209 [ NCBI ]
CGAP (NCI)Hs.525209
Alternative Splicing GalleryENSG00000197483
Gene ExpressionZNF628 [ NCBI-GEO ]   ZNF628 [ EBI - ARRAY_EXPRESS ]   ZNF628 [ SEEK ]   ZNF628 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF628 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89887
GTEX Portal (Tissue expression)ZNF628
Human Protein AtlasENSG00000197483-ZNF628 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5EBL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5EBL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5EBL2
Splice isoforms : SwissVarQ5EBL2
PhosPhoSitePlusQ5EBL2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF628
DMDM Disease mutations89887
Blocks (Seattle)ZNF628
SuperfamilyQ5EBL2
Human Protein Atlas [tissue]ENSG00000197483-ZNF628 [tissue]
Peptide AtlasQ5EBL2
HPRD18317
IPIIPI00101878   IPI00975525   IPI00254606   
Protein Interaction databases
DIP (DOE-UCLA)Q5EBL2
IntAct (EBI)Q5EBL2
FunCoupENSG00000197483
BioGRIDZNF628
STRING (EMBL)ZNF628
ZODIACZNF628
Ontologies - Pathways
QuickGOQ5EBL2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF628
Atlas of Cancer Signalling NetworkZNF628
Wikipedia pathwaysZNF628
Orthology - Evolution
OrthoDB89887
GeneTree (enSembl)ENSG00000197483
Phylogenetic Trees/Animal Genes : TreeFamZNF628
HOVERGENQ5EBL2
HOGENOMQ5EBL2
Homologs : HomoloGeneZNF628
Homology/Alignments : Family Browser (UCSC)ZNF628
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF628
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF628 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF628
dbVarZNF628
ClinVarZNF628
1000_GenomesZNF628 
Exome Variant ServerZNF628
ExAC (Exome Aggregation Consortium)ENSG00000197483
GNOMAD BrowserENSG00000197483
Genetic variants : HAPMAP89887
Genomic Variants (DGV)ZNF628 [DGVbeta]
DECIPHERZNF628 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF628 
Mutations
ICGC Data PortalZNF628 
TCGA Data PortalZNF628 
Broad Tumor PortalZNF628
OASIS PortalZNF628 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF628  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF628
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF628
DgiDB (Drug Gene Interaction Database)ZNF628
DoCM (Curated mutations)ZNF628 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF628 (select a term)
intoGenZNF628
Cancer3DZNF628(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610671   
Orphanet
MedgenZNF628
Genetic Testing Registry ZNF628
NextProtQ5EBL2 [Medical]
TSGene89887
GENETestsZNF628
Target ValidationZNF628
Huge Navigator ZNF628 [HugePedia]
snp3D : Map Gene to Disease89887
BioCentury BCIQZNF628
ClinGenZNF628
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89887
Chemical/Pharm GKB GenePA142670507
Clinical trialZNF628
Miscellaneous
canSAR (ICR)ZNF628 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF628
EVEXZNF628
GoPubMedZNF628
iHOPZNF628
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:34 CET 2017

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