Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF639 (zinc finger protein 639)

Identity

Alias (NCBI)ANC-2H01
ANC_2H01
ZASC1
HGNC (Hugo) ZNF639
HGNC Alias symbANC-2H01
ZASC1
HGNC Alias namezinc finger amplified in esophageal squamous cell carcinomas 1
LocusID (NCBI) 51193
Atlas_Id 52225
Location 3q26.33  [Link to chromosome band 3q26]
Location_base_pair Starts at 179323453 and ends at 179338583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF639   30950
Cards
Entrez_Gene (NCBI)ZNF639  51193  zinc finger protein 639
AliasesANC-2H01; ANC_2H01; ZASC1
GeneCards (Weizmann)ZNF639
Ensembl hg19 (Hinxton)ENSG00000121864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121864 [Gene_View]  ENSG00000121864 [Sequence]  chr3:179323453-179338583 [Contig_View]  ZNF639 [Vega]
ICGC DataPortalENSG00000121864
TCGA cBioPortalZNF639
AceView (NCBI)ZNF639
Genatlas (Paris)ZNF639
WikiGenes51193
SOURCE (Princeton)ZNF639
Genetics Home Reference (NIH)ZNF639
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF639  -     chr3:179323453-179338583 +  3q26.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF639  -     3q26.33   [Description]    (hg19-Feb_2009)
GoldenPathZNF639 - 3q26.33 [CytoView hg19]  ZNF639 - 3q26.33 [CytoView hg38]
ImmunoBaseENSG00000121864
genome Data Viewer NCBIZNF639 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB097862 AF003924 BC020500 BC026181 BF799661
RefSeq transcript (Entrez)NM_001303425 NM_001303426 NM_001375800 NM_001375802 NM_001375803 NM_001375804 NM_001375805 NM_001375806 NM_001375807 NM_016331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF639
Alternative Splicing GalleryENSG00000121864
Gene ExpressionZNF639 [ NCBI-GEO ]   ZNF639 [ EBI - ARRAY_EXPRESS ]   ZNF639 [ SEEK ]   ZNF639 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF639 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF639 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51193
GTEX Portal (Tissue expression)ZNF639
Human Protein AtlasENSG00000121864-ZNF639 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UID6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UID6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UID6
Splice isoforms : SwissVarQ9UID6
PhosPhoSitePlusQ9UID6
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF639
DMDM Disease mutations51193
Blocks (Seattle)ZNF639
SuperfamilyQ9UID6
Human Protein Atlas [tissue]ENSG00000121864-ZNF639 [tissue]
Peptide AtlasQ9UID6
HPRD15882
IPIIPI00008845   IPI00946378   IPI00947533   IPI00946540   IPI00947160   
Protein Interaction databases
DIP (DOE-UCLA)Q9UID6
IntAct (EBI)Q9UID6
FunCoupENSG00000121864
BioGRIDZNF639
STRING (EMBL)ZNF639
ZODIACZNF639
Ontologies - Pathways
QuickGOQ9UID6
Ontology : AmiGOtranscription regulatory region sequence-specific DNA binding  transcription regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  protein binding  nucleus  nucleoplasm  nucleoplasm  positive regulation of cell growth  protein self-association  negative regulation by host of viral transcription  positive regulation by host of viral transcription  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  viral entry into host cell  metal ion binding  
Ontology : EGO-EBItranscription regulatory region sequence-specific DNA binding  transcription regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  protein binding  nucleus  nucleoplasm  nucleoplasm  positive regulation of cell growth  protein self-association  negative regulation by host of viral transcription  positive regulation by host of viral transcription  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  viral entry into host cell  metal ion binding  
NDEx NetworkZNF639
Atlas of Cancer Signalling NetworkZNF639
Wikipedia pathwaysZNF639
Orthology - Evolution
OrthoDB51193
GeneTree (enSembl)ENSG00000121864
Phylogenetic Trees/Animal Genes : TreeFamZNF639
HOGENOMQ9UID6
Homologs : HomoloGeneZNF639
Homology/Alignments : Family Browser (UCSC)ZNF639
Gene fusions - Rearrangements
Fusion : QuiverZNF639
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF639 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF639
dbVarZNF639
ClinVarZNF639
1000_GenomesZNF639 
Exome Variant ServerZNF639
GNOMAD BrowserENSG00000121864
Varsome BrowserZNF639
Genetic variants : HAPMAP51193
Genomic Variants (DGV)ZNF639 [DGVbeta]
DECIPHERZNF639 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF639 
Mutations
ICGC Data PortalZNF639 
TCGA Data PortalZNF639 
Broad Tumor PortalZNF639
OASIS PortalZNF639 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF639  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF639
Mutations and Diseases : HGMDZNF639
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF639
DgiDB (Drug Gene Interaction Database)ZNF639
DoCM (Curated mutations)ZNF639 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF639 (select a term)
intoGenZNF639
Cancer3DZNF639(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF639
MedgenZNF639
Genetic Testing Registry ZNF639
NextProtQ9UID6 [Medical]
TSGene51193
GENETestsZNF639
Target ValidationZNF639
Huge Navigator ZNF639 [HugePedia]
snp3D : Map Gene to Disease51193
BioCentury BCIQZNF639
ClinGenZNF639
Clinical trials, drugs, therapy
Protein Interactions : CTD51193
Pharm GKB GenePA134990796
Clinical trialZNF639
Miscellaneous
canSAR (ICR)ZNF639 (select the gene name)
HarmonizomeZNF639
DataMed IndexZNF639
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF639
EVEXZNF639
GoPubMedZNF639
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:43:35 CEST 2020

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