Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF641 (zinc finger protein 641)

Identity

Alias_symbol (synonym)FLJ31295
Other alias-
HGNC (Hugo) ZNF641
LocusID (NCBI) 121274
Atlas_Id 76300
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48733793 and ends at 48744674 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARID2 (12q12) / ZNF641 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF641   31834
Cards
Entrez_Gene (NCBI)ZNF641  121274  zinc finger protein 641
Aliases
GeneCards (Weizmann)ZNF641
Ensembl hg19 (Hinxton)ENSG00000167528 [Gene_View]  chr12:48733793-48744674 [Contig_View]  ZNF641 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167528 [Gene_View]  chr12:48733793-48744674 [Contig_View]  ZNF641 [Vega]
ICGC DataPortalENSG00000167528
TCGA cBioPortalZNF641
AceView (NCBI)ZNF641
Genatlas (Paris)ZNF641
WikiGenes121274
SOURCE (Princeton)ZNF641
Genetics Home Reference (NIH)ZNF641
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF641  -     chr12:48733793-48744674 -  12q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF641  -     12q13.11   [Description]    (hg38-Dec_2013)
EnsemblZNF641 - 12q13.11 [CytoView hg19]  ZNF641 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF641 [Mapview hg19]  ZNF641 [Mapview hg38]
OMIM613906   
Gene and transcription
Genbank (Entrez)AK054984 AK055857 AK092740 AK127710 AK298064
RefSeq transcript (Entrez)NM_001172681 NM_001172682 NM_152320
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)ZNF641
Cluster EST : UnigeneHs.729288 [ NCBI ]
CGAP (NCI)Hs.729288
Alternative Splicing GalleryENSG00000167528
Gene ExpressionZNF641 [ NCBI-GEO ]   ZNF641 [ EBI - ARRAY_EXPRESS ]   ZNF641 [ SEEK ]   ZNF641 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF641 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121274
GTEX Portal (Tissue expression)ZNF641
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N77
Splice isoforms : SwissVarQ96N77
PhosPhoSitePlusQ96N77
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF641
DMDM Disease mutations121274
Blocks (Seattle)ZNF641
SuperfamilyQ96N77
Human Protein AtlasENSG00000167528
Peptide AtlasQ96N77
HPRD08711
IPIIPI00184699   IPI01021778   IPI01021965   IPI01021188   IPI01021335   IPI01020946   IPI00791541   IPI00792695   
Protein Interaction databases
DIP (DOE-UCLA)Q96N77
IntAct (EBI)Q96N77
FunCoupENSG00000167528
BioGRIDZNF641
STRING (EMBL)ZNF641
ZODIACZNF641
Ontologies - Pathways
QuickGOQ96N77
Ontology : AmiGOsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF641
Atlas of Cancer Signalling NetworkZNF641
Wikipedia pathwaysZNF641
Orthology - Evolution
OrthoDB121274
GeneTree (enSembl)ENSG00000167528
Phylogenetic Trees/Animal Genes : TreeFamZNF641
HOVERGENQ96N77
HOGENOMQ96N77
Homologs : HomoloGeneZNF641
Homology/Alignments : Family Browser (UCSC)ZNF641
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF641 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF641
dbVarZNF641
ClinVarZNF641
1000_GenomesZNF641 
Exome Variant ServerZNF641
ExAC (Exome Aggregation Consortium)ZNF641 (select the gene name)
Genetic variants : HAPMAP121274
Genomic Variants (DGV)ZNF641 [DGVbeta]
DECIPHER (Syndromes)12:48733793-48744674  ENSG00000167528
CONAN: Copy Number AnalysisZNF641 
Mutations
ICGC Data PortalZNF641 
TCGA Data PortalZNF641 
Broad Tumor PortalZNF641
OASIS PortalZNF641 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF641  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF641
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF641
DgiDB (Drug Gene Interaction Database)ZNF641
DoCM (Curated mutations)ZNF641 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF641 (select a term)
intoGenZNF641
Cancer3DZNF641(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613906   
Orphanet
MedgenZNF641
Genetic Testing Registry ZNF641
NextProtQ96N77 [Medical]
TSGene121274
GENETestsZNF641
Huge Navigator ZNF641 [HugePedia]
snp3D : Map Gene to Disease121274
BioCentury BCIQZNF641
ClinGenZNF641
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121274
Chemical/Pharm GKB GenePA142670508
Clinical trialZNF641
Miscellaneous
canSAR (ICR)ZNF641 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF641
EVEXZNF641
GoPubMedZNF641
iHOPZNF641
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.