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ZNF644 (zinc finger protein 644)

Identity

Alias_symbol (synonym)KIAA1221
BM-005
MGC60165
MGC70410
Other aliasMYP21
NatF
ZEP-2
HGNC (Hugo) ZNF644
LocusID (NCBI) 84146
Atlas_Id 76301
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 90915300 and ends at 91021508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADK (10q22.2) / ZNF644 (1p22.2)FBXL7 (5p15.1) / ZNF644 (1p22.2)NAP1L1 (12q21.2) / ZNF644 (1p22.2)
ZNF644 (1p22.2) / PTGER3 (1p31.1)ZNF644 (1p22.2) / ZNF644 (1p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

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Nomenclature
HGNC (Hugo)ZNF644   29222
Cards
Entrez_Gene (NCBI)ZNF644  84146  zinc finger protein 644
AliasesBM-005; MYP21; NatF; ZEP-2
GeneCards (Weizmann)ZNF644
Ensembl hg19 (Hinxton)ENSG00000122482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122482 [Gene_View]  chr1:90915300-91021508 [Contig_View]  ZNF644 [Vega]
ICGC DataPortalENSG00000122482
TCGA cBioPortalZNF644
AceView (NCBI)ZNF644
Genatlas (Paris)ZNF644
WikiGenes84146
SOURCE (Princeton)ZNF644
Genetics Home Reference (NIH)ZNF644
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF644  -     chr1:90915300-91021508 -  1p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF644  -     1p22.2   [Description]    (hg19-Feb_2009)
EnsemblZNF644 - 1p22.2 [CytoView hg19]  ZNF644 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIZNF644 [Mapview hg19]  ZNF644 [Mapview hg38]
OMIM614159   614167   
Gene and transcription
Genbank (Entrez)AB019255 AB033047 AF208847 AK001587 AK023596
RefSeq transcript (Entrez)NM_016620 NM_032186 NM_201269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF644
Cluster EST : UnigeneHs.745048 [ NCBI ]
CGAP (NCI)Hs.745048
Alternative Splicing GalleryENSG00000122482
Gene ExpressionZNF644 [ NCBI-GEO ]   ZNF644 [ EBI - ARRAY_EXPRESS ]   ZNF644 [ SEEK ]   ZNF644 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF644 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84146
GTEX Portal (Tissue expression)ZNF644
Human Protein AtlasENSG00000122482-ZNF644 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H582   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H582  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H582
Splice isoforms : SwissVarQ9H582
PhosPhoSitePlusQ9H582
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF644
DMDM Disease mutations84146
Blocks (Seattle)ZNF644
SuperfamilyQ9H582
Human Protein Atlas [tissue]ENSG00000122482-ZNF644 [tissue]
Peptide AtlasQ9H582
HPRD15885
IPIIPI00398725   IPI00479590   IPI00220279   IPI00940925   IPI01018761   IPI01010564   
Protein Interaction databases
DIP (DOE-UCLA)Q9H582
IntAct (EBI)Q9H582
FunCoupENSG00000122482
BioGRIDZNF644
STRING (EMBL)ZNF644
ZODIACZNF644
Ontologies - Pathways
QuickGOQ9H582
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  >a hrdf5 http://www.ebi.ac.uk/ego/DisplayGoTerm?id=GO:0005634 TARGET=EGO>nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF644
Atlas of Cancer Signalling NetworkZNF644
Wikipedia pathwaysZNF644
Orthology - Evolution
OrthoDB84146
GeneTree (enSembl)ENSG00000122482
Phylogenetic Trees/Animal Genes : TreeFamZNF644
HOVERGENQ9H582
HOGENOMQ9H582
Homologs : HomoloGeneZNF644
Homology/Alignments : Family Browser (UCSC)ZNF644
Gene fusions - Rearrangements
Tumor Fusion PortalZNF644
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF644 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF644
dbVarZNF644
ClinVarZNF644
1000_GenomesZNF644 
Exome Variant ServerZNF644
ExAC (Exome Aggregation Consortium)ENSG00000122482
GNOMAD BrowserENSG00000122482
Genetic variants : HAPMAP84146
Genomic Variants (DGV)ZNF644 [DGVbeta]
DECIPHERZNF644 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF644 
Mutations
ICGC Data PortalZNF644 
TCGA Data PortalZNF644 
Broad Tumor PortalZNF644
OASIS PortalZNF644 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF644  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF644
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ZNF644
DgiDB (Drug Gene Interaction Database)ZNF644
DoCM (Curated mutations)ZNF644 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF644 (select a term)
intoGenZNF644
Cancer3DZNF644(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614159    614167   
Orphanet
DisGeNETZNF644
MedgenZNF644
Genetic Testing Registry ZNF644
NextProtQ9H582 [Medical]
TSGene84146
GENETestsZNF644
Target ValidationZNF644
Huge Navigator ZNF644 [HugePedia]
snp3D : Map Gene to Disease84146
BioCentury BCIQZNF644
ClinGenZNF644
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84146
Chemical/Pharm GKB GenePA134984168
Clinical trialZNF644
Miscellaneous
canSAR (ICR)ZNF644 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF644
EVEXZNF644
GoPubMedZNF644
iHOPZNF644
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:44 CET 2017

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