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ZNF646 (zinc finger protein 646)

Identity

Alias_symbol (synonym)KIAA0296
Other alias-
HGNC (Hugo) ZNF646
LocusID (NCBI) 9726
Atlas_Id 76303
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31074422 and ends at 31083512 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PSMD6 (3p14.1) / ZNF646 (16p11.2)ZNF646 (16p11.2) / PSMD6 (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF646   29004
Cards
Entrez_Gene (NCBI)ZNF646  9726  zinc finger protein 646
Aliases
GeneCards (Weizmann)ZNF646
Ensembl hg19 (Hinxton)ENSG00000167395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167395 [Gene_View]  chr16:31074422-31083512 [Contig_View]  ZNF646 [Vega]
ICGC DataPortalENSG00000167395
TCGA cBioPortalZNF646
AceView (NCBI)ZNF646
Genatlas (Paris)ZNF646
WikiGenes9726
SOURCE (Princeton)ZNF646
Genetics Home Reference (NIH)ZNF646
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF646  -     chr16:31074422-31083512 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF646  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF646 - 16p11.2 [CytoView hg19]  ZNF646 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF646 [Mapview hg19]  ZNF646 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002294 AK304808 BC035589
RefSeq transcript (Entrez)NM_014699
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF646
Cluster EST : UnigeneHs.119273 [ NCBI ]
CGAP (NCI)Hs.119273
Alternative Splicing GalleryENSG00000167395
Gene ExpressionZNF646 [ NCBI-GEO ]   ZNF646 [ EBI - ARRAY_EXPRESS ]   ZNF646 [ SEEK ]   ZNF646 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF646 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9726
GTEX Portal (Tissue expression)ZNF646
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15015   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15015  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15015
Splice isoforms : SwissVarO15015
PhosPhoSitePlusO15015
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF646
DMDM Disease mutations9726
Blocks (Seattle)ZNF646
SuperfamilyO15015
Human Protein AtlasENSG00000167395
Peptide AtlasO15015
HPRD15886
IPIIPI00004419   IPI00644311   IPI00940489   IPI00797640   
Protein Interaction databases
DIP (DOE-UCLA)O15015
IntAct (EBI)O15015
FunCoupENSG00000167395
BioGRIDZNF646
STRING (EMBL)ZNF646
ZODIACZNF646
Ontologies - Pathways
QuickGOO15015
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF646
Atlas of Cancer Signalling NetworkZNF646
Wikipedia pathwaysZNF646
Orthology - Evolution
OrthoDB9726
GeneTree (enSembl)ENSG00000167395
Phylogenetic Trees/Animal Genes : TreeFamZNF646
HOVERGENO15015
HOGENOMO15015
Homologs : HomoloGeneZNF646
Homology/Alignments : Family Browser (UCSC)ZNF646
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF646 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF646
dbVarZNF646
ClinVarZNF646
1000_GenomesZNF646 
Exome Variant ServerZNF646
ExAC (Exome Aggregation Consortium)ZNF646 (select the gene name)
Genetic variants : HAPMAP9726
Genomic Variants (DGV)ZNF646 [DGVbeta]
DECIPHERZNF646 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF646 
Mutations
ICGC Data PortalZNF646 
TCGA Data PortalZNF646 
Broad Tumor PortalZNF646
OASIS PortalZNF646 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF646  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF646
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF646
DgiDB (Drug Gene Interaction Database)ZNF646
DoCM (Curated mutations)ZNF646 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF646 (select a term)
intoGenZNF646
Cancer3DZNF646(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF646
Genetic Testing Registry ZNF646
NextProtO15015 [Medical]
TSGene9726
GENETestsZNF646
Target ValidationZNF646
Huge Navigator ZNF646 [HugePedia]
snp3D : Map Gene to Disease9726
BioCentury BCIQZNF646
ClinGenZNF646
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9726
Chemical/Pharm GKB GenePA134955953
Clinical trialZNF646
Miscellaneous
canSAR (ICR)ZNF646 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF646
EVEXZNF646
GoPubMedZNF646
iHOPZNF646
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:06 CEST 2017

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