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ZNF648 (zinc finger protein 648)

Identity

Alias_symbol (synonym)FLJ46813
Other alias-
HGNC (Hugo) ZNF648
LocusID (NCBI) 127665
Atlas_Id 76304
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 182054570 and ends at 182061712 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF648   18190
Cards
Entrez_Gene (NCBI)ZNF648  127665  zinc finger protein 648
Aliases
GeneCards (Weizmann)ZNF648
Ensembl hg19 (Hinxton)ENSG00000179930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179930 [Gene_View]  chr1:182054570-182061712 [Contig_View]  ZNF648 [Vega]
ICGC DataPortalENSG00000179930
TCGA cBioPortalZNF648
AceView (NCBI)ZNF648
Genatlas (Paris)ZNF648
WikiGenes127665
SOURCE (Princeton)ZNF648
Genetics Home Reference (NIH)ZNF648
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF648  -     chr1:182054570-182061712 -  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF648  -     1q25.3   [Description]    (hg19-Feb_2009)
EnsemblZNF648 - 1q25.3 [CytoView hg19]  ZNF648 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIZNF648 [Mapview hg19]  ZNF648 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128654 BC137223 BC137224
RefSeq transcript (Entrez)NM_001009992
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF648
Cluster EST : UnigeneHs.684328 [ NCBI ]
CGAP (NCI)Hs.684328
Alternative Splicing GalleryENSG00000179930
Gene ExpressionZNF648 [ NCBI-GEO ]   ZNF648 [ EBI - ARRAY_EXPRESS ]   ZNF648 [ SEEK ]   ZNF648 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF648 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127665
GTEX Portal (Tissue expression)ZNF648
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T619
Splice isoforms : SwissVarQ5T619
PhosPhoSitePlusQ5T619
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF648
DMDM Disease mutations127665
Blocks (Seattle)ZNF648
SuperfamilyQ5T619
Human Protein AtlasENSG00000179930
Peptide AtlasQ5T619
HPRD18361
IPIIPI00058344   
Protein Interaction databases
DIP (DOE-UCLA)Q5T619
IntAct (EBI)Q5T619
FunCoupENSG00000179930
BioGRIDZNF648
STRING (EMBL)ZNF648
ZODIACZNF648
Ontologies - Pathways
QuickGOQ5T619
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF648
Atlas of Cancer Signalling NetworkZNF648
Wikipedia pathwaysZNF648
Orthology - Evolution
OrthoDB127665
GeneTree (enSembl)ENSG00000179930
Phylogenetic Trees/Animal Genes : TreeFamZNF648
HOVERGENQ5T619
HOGENOMQ5T619
Homologs : HomoloGeneZNF648
Homology/Alignments : Family Browser (UCSC)ZNF648
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF648 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF648
dbVarZNF648
ClinVarZNF648
1000_GenomesZNF648 
Exome Variant ServerZNF648
ExAC (Exome Aggregation Consortium)ZNF648 (select the gene name)
Genetic variants : HAPMAP127665
Genomic Variants (DGV)ZNF648 [DGVbeta]
DECIPHERZNF648 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF648 
Mutations
ICGC Data PortalZNF648 
TCGA Data PortalZNF648 
Broad Tumor PortalZNF648
OASIS PortalZNF648 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF648  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF648
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF648
DgiDB (Drug Gene Interaction Database)ZNF648
DoCM (Curated mutations)ZNF648 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF648 (select a term)
intoGenZNF648
Cancer3DZNF648(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF648
Genetic Testing Registry ZNF648
NextProtQ5T619 [Medical]
TSGene127665
GENETestsZNF648
Target ValidationZNF648
Huge Navigator ZNF648 [HugePedia]
snp3D : Map Gene to Disease127665
BioCentury BCIQZNF648
ClinGenZNF648
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127665
Chemical/Pharm GKB GenePA134974398
Clinical trialZNF648
Miscellaneous
canSAR (ICR)ZNF648 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF648
EVEXZNF648
GoPubMedZNF648
iHOPZNF648
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:06 CEST 2017

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