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ZNF649 (zinc finger protein 649)

Identity

Other names-
HGNC (Hugo) ZNF649
LocusID (NCBI) 65251
Location 19q13.41
Location_base_pair Starts at 52392488 and ends at 52408305 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors ProstateOverviewID5041

External links

Nomenclature
HGNC (Hugo)ZNF649   25741
Cards
Entrez_Gene (NCBI)ZNF649  65251  zinc finger protein 649
GeneCards (Weizmann)ZNF649
Ensembl (Hinxton)ENSG00000198093 [Gene_View]  chr19:52392488-52408305 [Contig_View]  ZNF649 [Vega]
ICGC DataPortalENSG00000198093
cBioPortalZNF649
AceView (NCBI)ZNF649
Genatlas (Paris)ZNF649
WikiGenes65251
SOURCE (Princeton)NM_023074
Genomic and cartography
GoldenPath (UCSC)ZNF649  -  19q13.41   chr19:52392488-52408305 -  19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF649 - 19q13.41 [CytoView]
Mapping of homologs : NCBIZNF649 [Mapview]
OMIM611903   
Gene and transcription
Genbank (Entrez)AF086241 AK000909 AK022706 AK225480 AK315487
RefSeq transcript (Entrez)NM_023074
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838498 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF649
Cluster EST : UnigeneHs.148322 [ NCBI ]
CGAP (NCI)Hs.148322
Alternative Splicing : Fast-db (Paris)GSHG0016065
Alternative Splicing GalleryENSG00000198093
Gene ExpressionZNF649 [ NCBI-GEO ]     ZNF649 [ SEEK ]   ZNF649 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS31 (Uniprot)
NextProtQ9BS31  [Medical]
With graphics : InterProQ9BS31
Splice isoforms : SwissVarQ9BS31 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box [organisation]   Znf_C2H2 [organisation]   Znf_C2H2-like [organisation]   Znf_C2H2/integrase_DNA-bd [organisation]  
Related proteins : CluSTrQ9BS31
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations65251
Blocks (Seattle)Q9BS31
Human Protein AtlasENSG00000198093 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9BS31
HPRD07785
IPIIPI00011987   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS31
IntAct (EBI)Q9BS31
FunCoupENSG00000198093
BioGRIDZNF649
InParanoidQ9BS31
Interologous Interaction database Q9BS31
IntegromeDBZNF649
STRING (EMBL)ZNF649
Ontologies - Pathways
Ontology : AmiGODNA binding  protein binding  extracellular space  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  extracellular space  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Protein Interaction DatabaseZNF649
Wikipedia pathwaysZNF649
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZNF649
snp3D : Map Gene to Disease65251
SNP (GeneSNP Utah)ZNF649
SNP : HGBaseZNF649
Genetic variants : HAPMAPZNF649
Exome VariantZNF649
1000_GenomesZNF649 
ICGC programENSG00000198093 
Somatic Mutations in Cancer : COSMICZNF649 
CONAN: Copy Number AnalysisZNF649 
Mutations and Diseases : HGMDZNF649
Genomic VariantsZNF649  ZNF649 [DGVbeta]
dbVarZNF649
ClinVarZNF649
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611903   
MedgenZNF649
GENETestsZNF649
Disease Genetic AssociationZNF649
Huge Navigator ZNF649 [HugePedia]  ZNF649 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneZNF649
Homology/Alignments : Family Browser (UCSC)ZNF649
Phylogenetic Trees/Animal Genes : TreeFamZNF649
Chemical/Protein Interactions : CTD65251
Chemical/Pharm GKB GenePA143485678
Clinical trialZNF649
Cancer Resource (Charite)ENSG00000198093
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineZNF649
iHOPZNF649
OncoSearchZNF649
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:52:55 CEST 2014

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