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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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ZNF649 (zinc finger protein 649)

Identity

Other names-
HGNC (Hugo) ZNF649
LocusID (NCBI) 65251
Location 19q13.41
Location_base_pair Starts at 52392488 and ends at 52408305 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)ZNF649   25741
Cards
Entrez_Gene (NCBI)ZNF649  65251  zinc finger protein 649
GeneCards (Weizmann)ZNF649
Ensembl hg19 (Hinxton)ENSG00000198093 [Gene_View]  chr19:52392488-52408305 [Contig_View]  ZNF649 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198093 [Gene_View]  chr19:52392488-52408305 [Contig_View]  ZNF649 [Vega]
ICGC DataPortalENSG00000198093
cBioPortalZNF649
AceView (NCBI)ZNF649
Genatlas (Paris)ZNF649
WikiGenes65251
SOURCE (Princeton)ZNF649
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF649  -     chr19:52392488-52408305 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF649  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblZNF649 - 19q13.41 [CytoView hg19]  ZNF649 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF649 [Mapview hg19]  ZNF649 [Mapview hg38]
OMIM611903   
Gene and transcription
Genbank (Entrez)AF086241 AK000909 AK022706 AK225480 AK315487
RefSeq transcript (Entrez)NM_023074
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF649
Cluster EST : UnigeneHs.148322 [ NCBI ]
CGAP (NCI)Hs.148322
Alternative Splicing : Fast-db (Paris)GSHG0016065
Alternative Splicing GalleryENSG00000198093
Gene ExpressionZNF649 [ NCBI-GEO ]     ZNF649 [ SEEK ]   ZNF649 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS31 (Uniprot)
NextProtQ9BS31  [Medical]
With graphics : InterProQ9BS31
Splice isoforms : SwissVarQ9BS31 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9BS31
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations65251
Blocks (Seattle)Q9BS31
Human Protein AtlasENSG00000198093
Peptide AtlasQ9BS31
HPRD07785
IPIIPI00011987   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS31
IntAct (EBI)Q9BS31
FunCoupENSG00000198093
BioGRIDZNF649
IntegromeDBZNF649
STRING (EMBL)ZNF649
Ontologies - Pathways
QuickGOQ9BS31
Ontology : AmiGODNA binding  protein binding  extracellular space  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  extracellular space  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Protein Interaction DatabaseZNF649
DoCM (Curated mutations)ZNF649
Wikipedia pathwaysZNF649
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerZNF649 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF649
dbVarZNF649
ClinVarZNF649
1000_GenomesZNF649 
Exome Variant ServerZNF649
SNP (GeneSNP Utah)ZNF649
SNP : HGBaseZNF649
Genetic variants : HAPMAPZNF649
Genomic Variants (DGV)ZNF649 [DGVbeta]
Mutations
ICGC Data PortalENSG00000198093 
Somatic Mutations in Cancer : COSMICZNF649 
CONAN: Copy Number AnalysisZNF649 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:52392488-52408305
Mutations and Diseases : HGMDZNF649
OMIM611903   
MedgenZNF649
NextProtQ9BS31 [Medical]
GENETestsZNF649
Disease Genetic AssociationZNF649
Huge Navigator ZNF649 [HugePedia]  ZNF649 [HugeCancerGEM]
snp3D : Map Gene to Disease65251
DGIdb (Drug Gene Interaction db)ZNF649
General knowledge
Homologs : HomoloGeneZNF649
Homology/Alignments : Family Browser (UCSC)ZNF649
Phylogenetic Trees/Animal Genes : TreeFamZNF649
Chemical/Protein Interactions : CTD65251
Chemical/Pharm GKB GenePA143485678
Clinical trialZNF649
Cancer Resource (Charite)ENSG00000198093
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineZNF649
GoPubMedZNF649
iHOPZNF649
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:55:50 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.