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ZNF652 (zinc finger protein 652)

Identity

Alias_symbol (synonym)KIAA0924
Other alias-
HGNC (Hugo) ZNF652
LocusID (NCBI) 22834
Atlas_Id 51563
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 49289206 and ends at 49362114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APLP2 (11q24.3) / ZNF652 (17q21.32)CCNY (10p11.21) / ZNF652 (17q21.32)INTS2 (17q23.2) / ZNF652 (17q21.32)
MSH4 (1p31.1) / ZNF652 (17q21.32)UBE2Z (17q21.32) / ZNF652 (17q21.32)ZNF652 (17q21.32) / ZNF652 (17q21.32)
UBE2Z 17q21.32 / ZNF652 17q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  inv(16)(p13q24) CBFA2T3/GLIS2


External links

Nomenclature
HGNC (Hugo)ZNF652   29147
Cards
Entrez_Gene (NCBI)ZNF652  22834  zinc finger protein 652
Aliases
GeneCards (Weizmann)ZNF652
Ensembl hg19 (Hinxton)ENSG00000198740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198740 [Gene_View]  chr17:49289206-49362114 [Contig_View]  ZNF652 [Vega]
ICGC DataPortalENSG00000198740
TCGA cBioPortalZNF652
AceView (NCBI)ZNF652
Genatlas (Paris)ZNF652
WikiGenes22834
SOURCE (Princeton)ZNF652
Genetics Home Reference (NIH)ZNF652
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF652  -     chr17:49289206-49362114 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF652  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblZNF652 - 17q21.32 [CytoView hg19]  ZNF652 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIZNF652 [Mapview hg19]  ZNF652 [Mapview hg38]
OMIM613907   
Gene and transcription
Genbank (Entrez)AB023141 AK093834 AK292667 AW449799 BC028045
RefSeq transcript (Entrez)NM_001145365 NM_014897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF652
Cluster EST : UnigeneHs.712948 [ NCBI ]
CGAP (NCI)Hs.712948
Alternative Splicing GalleryENSG00000198740
Gene ExpressionZNF652 [ NCBI-GEO ]   ZNF652 [ EBI - ARRAY_EXPRESS ]   ZNF652 [ SEEK ]   ZNF652 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF652 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22834
GTEX Portal (Tissue expression)ZNF652
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2D9
Splice isoforms : SwissVarQ9Y2D9
PhosPhoSitePlusQ9Y2D9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF652
DMDM Disease mutations22834
Blocks (Seattle)ZNF652
SuperfamilyQ9Y2D9
Human Protein AtlasENSG00000198740
Peptide AtlasQ9Y2D9
HPRD18362
IPIIPI00790021   IPI00007126   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2D9
IntAct (EBI)Q9Y2D9
FunCoupENSG00000198740
BioGRIDZNF652
STRING (EMBL)ZNF652
ZODIACZNF652
Ontologies - Pathways
QuickGOQ9Y2D9
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF652
Atlas of Cancer Signalling NetworkZNF652
Wikipedia pathwaysZNF652
Orthology - Evolution
OrthoDB22834
GeneTree (enSembl)ENSG00000198740
Phylogenetic Trees/Animal Genes : TreeFamZNF652
HOVERGENQ9Y2D9
HOGENOMQ9Y2D9
Homologs : HomoloGeneZNF652
Homology/Alignments : Family Browser (UCSC)ZNF652
Gene fusions - Rearrangements
Fusion : MitelmanINTS2/ZNF652 [17q23.2/17q21.32]  [t(17;17)(q21;q23)]  
Fusion : MitelmanUBE2Z/ZNF652 [17q21.32/17q21.32]  [t(17;17)(q21;q21)]  
Fusion: TCGAUBE2Z 17q21.32 ZNF652 17q21.32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF652 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF652
dbVarZNF652
ClinVarZNF652
1000_GenomesZNF652 
Exome Variant ServerZNF652
ExAC (Exome Aggregation Consortium)ZNF652 (select the gene name)
Genetic variants : HAPMAP22834
Genomic Variants (DGV)ZNF652 [DGVbeta]
DECIPHERZNF652 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF652 
Mutations
ICGC Data PortalZNF652 
TCGA Data PortalZNF652 
Broad Tumor PortalZNF652
OASIS PortalZNF652 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF652  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF652
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF652
DgiDB (Drug Gene Interaction Database)ZNF652
DoCM (Curated mutations)ZNF652 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF652 (select a term)
intoGenZNF652
Cancer3DZNF652(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613907   
Orphanet
MedgenZNF652
Genetic Testing Registry ZNF652
NextProtQ9Y2D9 [Medical]
TSGene22834
GENETestsZNF652
Target ValidationZNF652
Huge Navigator ZNF652 [HugePedia]
snp3D : Map Gene to Disease22834
BioCentury BCIQZNF652
ClinGenZNF652
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22834
Chemical/Pharm GKB GenePA134896615
Clinical trialZNF652
Miscellaneous
canSAR (ICR)ZNF652 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF652
EVEXZNF652
GoPubMedZNF652
iHOPZNF652
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:53 CEST 2017

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