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ZNF652 (zinc finger protein 652)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF652
HGNC Alias symbKIAA0924
LocusID (NCBI) 22834
Atlas_Id 51563
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 49289206 and ends at 49362473 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APLP2 (11q24.3) / ZNF652 (17q21.32)CCNY (10p11.21) / ZNF652 (17q21.32)INTS2 (17q23.2) / ZNF652 (17q21.32)
MSH4 (1p31.1) / ZNF652 (17q21.32)UBE2Z (17q21.32) / ZNF652 (17q21.32)ZNF652 (17q21.32) / ZNF652 (17q21.32)
UBE2Z 17q21.32 / ZNF652 17q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  inv(16)(p13q24) CBFA2T3/GLIS2


External links

 

Nomenclature
HGNC (Hugo)ZNF652   29147
Cards
Entrez_Gene (NCBI)ZNF652    zinc finger protein 652
Aliases
GeneCards (Weizmann)ZNF652
Ensembl hg19 (Hinxton)ENSG00000198740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198740 [Gene_View]  ENSG00000198740 [Sequence]  chr17:49289206-49362473 [Contig_View]  ZNF652 [Vega]
ICGC DataPortalENSG00000198740
TCGA cBioPortalZNF652
AceView (NCBI)ZNF652
Genatlas (Paris)ZNF652
SOURCE (Princeton)ZNF652
Genetics Home Reference (NIH)ZNF652
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF652  -     chr17:49289206-49362473 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF652  -     17q21.32   [Description]    (hg19-Feb_2009)
GoldenPathZNF652 - 17q21.32 [CytoView hg19]  ZNF652 - 17q21.32 [CytoView hg38]
ImmunoBaseENSG00000198740
Genome Data Viewer NCBIZNF652 [Mapview hg19]  
OMIM613907   
Gene and transcription
Genbank (Entrez)AB023141 AK093834 AK292667 AW449799 BC028045
RefSeq transcript (Entrez)NM_001145365 NM_014897
Consensus coding sequences : CCDS (NCBI)ZNF652
Gene ExpressionZNF652 [ NCBI-GEO ]   ZNF652 [ EBI - ARRAY_EXPRESS ]   ZNF652 [ SEEK ]   ZNF652 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF652 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF652 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22834
GTEX Portal (Tissue expression)ZNF652
Human Protein AtlasENSG00000198740-ZNF652 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2D9
PhosPhoSitePlusQ9Y2D9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF652
SuperfamilyQ9Y2D9
AlphaFold pdb e-kbQ9Y2D9   
Human Protein Atlas [tissue]ENSG00000198740-ZNF652 [tissue]
HPRD18362
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2D9
IntAct (EBI)Q9Y2D9
BioGRIDZNF652
STRING (EMBL)ZNF652
ZODIACZNF652
Ontologies - Pathways
QuickGOQ9Y2D9
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF652
Atlas of Cancer Signalling NetworkZNF652
Wikipedia pathwaysZNF652
Orthology - Evolution
OrthoDB22834
GeneTree (enSembl)ENSG00000198740
Phylogenetic Trees/Animal Genes : TreeFamZNF652
Homologs : HomoloGeneZNF652
Homology/Alignments : Family Browser (UCSC)ZNF652
Gene fusions - Rearrangements
Fusion : MitelmanINTS2/ZNF652 [17q23.2/17q21.32]  
Fusion : MitelmanUBE2Z/ZNF652 [17q21.32/17q21.32]  
Fusion : QuiverZNF652
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF652 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF652
dbVarZNF652
ClinVarZNF652
MonarchZNF652
1000_GenomesZNF652 
Exome Variant ServerZNF652
GNOMAD BrowserENSG00000198740
Varsome BrowserZNF652
ACMGZNF652 variants
VarityQ9Y2D9
Genomic Variants (DGV)ZNF652 [DGVbeta]
DECIPHERZNF652 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF652 
Mutations
ICGC Data PortalZNF652 
TCGA Data PortalZNF652 
Broad Tumor PortalZNF652
OASIS PortalZNF652 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF652  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF652
Mutations and Diseases : HGMDZNF652
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF652
DgiDB (Drug Gene Interaction Database)ZNF652
DoCM (Curated mutations)ZNF652
CIViC (Clinical Interpretations of Variants in Cancer)ZNF652
Cancer3DZNF652
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613907   
Orphanet
DisGeNETZNF652
MedgenZNF652
Genetic Testing Registry ZNF652
NextProtQ9Y2D9 [Medical]
GENETestsZNF652
Target ValidationZNF652
Huge Navigator ZNF652 [HugePedia]
ClinGenZNF652
Clinical trials, drugs, therapy
MyCancerGenomeZNF652
Protein Interactions : CTDZNF652
Pharm GKB GenePA134896615
PharosQ9Y2D9
Clinical trialZNF652
Miscellaneous
canSAR (ICR)ZNF652
HarmonizomeZNF652
DataMed IndexZNF652
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF652
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:39:23 CEST 2021

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