Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF653 (zinc finger protein 653)

Identity

Alias_symbol (synonym)Zip67
Other aliasE430039K05Rik
ZIP67
HGNC (Hugo) ZNF653
LocusID (NCBI) 115950
Atlas_Id 76306
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11594242 and ends at 11616738 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF653 (19p13.2) / NFIC (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF653   25196
Cards
Entrez_Gene (NCBI)ZNF653  115950  zinc finger protein 653
AliasesE430039K05Rik; ZIP67
GeneCards (Weizmann)ZNF653
Ensembl hg19 (Hinxton)ENSG00000161914 [Gene_View]  chr19:11594242-11616738 [Contig_View]  ZNF653 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161914 [Gene_View]  chr19:11594242-11616738 [Contig_View]  ZNF653 [Vega]
ICGC DataPortalENSG00000161914
TCGA cBioPortalZNF653
AceView (NCBI)ZNF653
Genatlas (Paris)ZNF653
WikiGenes115950
SOURCE (Princeton)ZNF653
Genetics Home Reference (NIH)ZNF653
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF653  -     chr19:11594242-11616738 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF653  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF653 - 19p13.2 [CytoView hg19]  ZNF653 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF653 [Mapview hg19]  ZNF653 [Mapview hg38]
OMIM611371   
Gene and transcription
Genbank (Entrez)AK131037 AK314986 AY072704 BC014187 BC016816
RefSeq transcript (Entrez)NM_138783
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF653
Cluster EST : UnigeneHs.465928 [ NCBI ]
CGAP (NCI)Hs.465928
Alternative Splicing GalleryENSG00000161914
Gene ExpressionZNF653 [ NCBI-GEO ]   ZNF653 [ EBI - ARRAY_EXPRESS ]   ZNF653 [ SEEK ]   ZNF653 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF653 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115950
GTEX Portal (Tissue expression)ZNF653
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CK0
Splice isoforms : SwissVarQ96CK0
PhosPhoSitePlusQ96CK0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)AT_hook_DNA-bd_motif    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)AT_hook (SM00384)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF653
DMDM Disease mutations115950
Blocks (Seattle)ZNF653
SuperfamilyQ96CK0
Human Protein AtlasENSG00000161914
Peptide AtlasQ96CK0
HPRD15889
IPIIPI00107595   
Protein Interaction databases
DIP (DOE-UCLA)Q96CK0
IntAct (EBI)Q96CK0
FunCoupENSG00000161914
BioGRIDZNF653
STRING (EMBL)ZNF653
ZODIACZNF653
Ontologies - Pathways
QuickGOQ96CK0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF653
Atlas of Cancer Signalling NetworkZNF653
Wikipedia pathwaysZNF653
Orthology - Evolution
OrthoDB115950
GeneTree (enSembl)ENSG00000161914
Phylogenetic Trees/Animal Genes : TreeFamZNF653
HOVERGENQ96CK0
HOGENOMQ96CK0
Homologs : HomoloGeneZNF653
Homology/Alignments : Family Browser (UCSC)ZNF653
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF653 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF653
dbVarZNF653
ClinVarZNF653
1000_GenomesZNF653 
Exome Variant ServerZNF653
ExAC (Exome Aggregation Consortium)ZNF653 (select the gene name)
Genetic variants : HAPMAP115950
Genomic Variants (DGV)ZNF653 [DGVbeta]
DECIPHER (Syndromes)19:11594242-11616738  ENSG00000161914
CONAN: Copy Number AnalysisZNF653 
Mutations
ICGC Data PortalZNF653 
TCGA Data PortalZNF653 
Broad Tumor PortalZNF653
OASIS PortalZNF653 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF653  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF653
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF653
DgiDB (Drug Gene Interaction Database)ZNF653
DoCM (Curated mutations)ZNF653 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF653 (select a term)
intoGenZNF653
Cancer3DZNF653(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611371   
Orphanet
MedgenZNF653
Genetic Testing Registry ZNF653
NextProtQ96CK0 [Medical]
TSGene115950
GENETestsZNF653
Huge Navigator ZNF653 [HugePedia]
snp3D : Map Gene to Disease115950
BioCentury BCIQZNF653
ClinGenZNF653
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115950
Chemical/Pharm GKB GenePA134989597
Clinical trialZNF653
Miscellaneous
canSAR (ICR)ZNF653 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF653
EVEXZNF653
GoPubMedZNF653
iHOPZNF653
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:34 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.