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ZNF654 (zinc finger protein 654)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF654
HGNC Alias symbFLJ10997
FLJ21142
LocusID (NCBI) 55279
Atlas_Id 76307
Location 3p11.1  [Link to chromosome band 3p11]
Location_base_pair Starts at 88059255 and ends at 88144660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF654   25612
Cards
Entrez_Gene (NCBI)ZNF654    zinc finger protein 654
Aliases
GeneCards (Weizmann)ZNF654
Ensembl hg19 (Hinxton)ENSG00000175105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175105 [Gene_View]  ENSG00000175105 [Sequence]  chr3:88059255-88144660 [Contig_View]  ZNF654 [Vega]
ICGC DataPortalENSG00000175105
TCGA cBioPortalZNF654
AceView (NCBI)ZNF654
Genatlas (Paris)ZNF654
SOURCE (Princeton)ZNF654
Genetics Home Reference (NIH)ZNF654
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF654  -     chr3:88059255-88144660 +  3p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF654  -     3p11.1   [Description]    (hg19-Feb_2009)
GoldenPathZNF654 - 3p11.1 [CytoView hg19]  ZNF654 - 3p11.1 [CytoView hg38]
ImmunoBaseENSG00000175105
Genome Data Viewer NCBIZNF654 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA767937 AF543494 AK001859 AK024795 AL357201
RefSeq transcript (Entrez)NM_001350134 NM_001350135 NM_001350136 NM_001350137 NM_001366093 NM_001366095 NM_001366096 NM_001366097 NM_018293 NM_032198
Consensus coding sequences : CCDS (NCBI)ZNF654
Gene ExpressionZNF654 [ NCBI-GEO ]   ZNF654 [ EBI - ARRAY_EXPRESS ]   ZNF654 [ SEEK ]   ZNF654 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF654 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF654 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55279
GTEX Portal (Tissue expression)ZNF654
Human Protein AtlasENSG00000175105-ZNF654 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZM8
PhosPhoSitePlusQ8IZM8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF654
SuperfamilyQ8IZM8
AlphaFold pdb e-kbQ8IZM8   
Human Protein Atlas [tissue]ENSG00000175105-ZNF654 [tissue]
HPRD07722
Protein Interaction databases
DIP (DOE-UCLA)Q8IZM8
IntAct (EBI)Q8IZM8
BioGRIDZNF654
STRING (EMBL)ZNF654
ZODIACZNF654
Ontologies - Pathways
QuickGOQ8IZM8
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF654
Atlas of Cancer Signalling NetworkZNF654
Wikipedia pathwaysZNF654
Orthology - Evolution
OrthoDB55279
GeneTree (enSembl)ENSG00000175105
Phylogenetic Trees/Animal Genes : TreeFamZNF654
Homologs : HomoloGeneZNF654
Homology/Alignments : Family Browser (UCSC)ZNF654
Gene fusions - Rearrangements
Fusion : QuiverZNF654
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF654 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF654
dbVarZNF654
ClinVarZNF654
MonarchZNF654
1000_GenomesZNF654 
Exome Variant ServerZNF654
GNOMAD BrowserENSG00000175105
Varsome BrowserZNF654
ACMGZNF654 variants
VarityQ8IZM8
Genomic Variants (DGV)ZNF654 [DGVbeta]
DECIPHERZNF654 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF654 
Mutations
ICGC Data PortalZNF654 
TCGA Data PortalZNF654 
Broad Tumor PortalZNF654
OASIS PortalZNF654 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF654  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF654
Mutations and Diseases : HGMDZNF654
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF654
DgiDB (Drug Gene Interaction Database)ZNF654
DoCM (Curated mutations)ZNF654
CIViC (Clinical Interpretations of Variants in Cancer)ZNF654
Cancer3DZNF654
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF654
MedgenZNF654
Genetic Testing Registry ZNF654
NextProtQ8IZM8 [Medical]
GENETestsZNF654
Target ValidationZNF654
Huge Navigator ZNF654 [HugePedia]
ClinGenZNF654
Clinical trials, drugs, therapy
MyCancerGenomeZNF654
Protein Interactions : CTDZNF654
Pharm GKB GenePA134923001
PharosQ8IZM8
Clinical trialZNF654
Miscellaneous
canSAR (ICR)ZNF654
HarmonizomeZNF654
ARCHS4ZNF654
DataMed IndexZNF654
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF654
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 19:33:50 CET 2022

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