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ZNF654 (zinc finger protein 654)

Identity

Alias_symbol (synonym)FLJ10997
FLJ21142
Other alias-
HGNC (Hugo) ZNF654
LocusID (NCBI) 55279
Atlas_Id 76307
Location 3p11.1  [Link to chromosome band 3p11]
Location_base_pair Starts at 88059285 and ends at 88144661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF654   25612
Cards
Entrez_Gene (NCBI)ZNF654  55279  zinc finger protein 654
Aliases
GeneCards (Weizmann)ZNF654
Ensembl hg19 (Hinxton)ENSG00000175105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175105 [Gene_View]  chr3:88059285-88144661 [Contig_View]  ZNF654 [Vega]
ICGC DataPortalENSG00000175105
TCGA cBioPortalZNF654
AceView (NCBI)ZNF654
Genatlas (Paris)ZNF654
WikiGenes55279
SOURCE (Princeton)ZNF654
Genetics Home Reference (NIH)ZNF654
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF654  -     chr3:88059285-88144661 +  3p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF654  -     3p11.1   [Description]    (hg19-Feb_2009)
EnsemblZNF654 - 3p11.1 [CytoView hg19]  ZNF654 - 3p11.1 [CytoView hg38]
Mapping of homologs : NCBIZNF654 [Mapview hg19]  ZNF654 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA767937 AF543494 AK001859 AK024795 AL357201
RefSeq transcript (Entrez)NM_001350134 NM_001350135 NM_001350136 NM_001350137 NM_018293 NM_032198
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF654
Cluster EST : UnigeneHs.661116 [ NCBI ]
CGAP (NCI)Hs.661116
Alternative Splicing GalleryENSG00000175105
Gene ExpressionZNF654 [ NCBI-GEO ]   ZNF654 [ EBI - ARRAY_EXPRESS ]   ZNF654 [ SEEK ]   ZNF654 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF654 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55279
GTEX Portal (Tissue expression)ZNF654
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZM8
Splice isoforms : SwissVarQ8IZM8
PhosPhoSitePlusQ8IZM8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF654
DMDM Disease mutations55279
Blocks (Seattle)ZNF654
SuperfamilyQ8IZM8
Human Protein AtlasENSG00000175105
Peptide AtlasQ8IZM8
HPRD07722
IPIIPI00218025   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZM8
IntAct (EBI)Q8IZM8
FunCoupENSG00000175105
BioGRIDZNF654
STRING (EMBL)ZNF654
ZODIACZNF654
Ontologies - Pathways
QuickGOQ8IZM8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF654
Atlas of Cancer Signalling NetworkZNF654
Wikipedia pathwaysZNF654
Orthology - Evolution
OrthoDB55279
GeneTree (enSembl)ENSG00000175105
Phylogenetic Trees/Animal Genes : TreeFamZNF654
HOVERGENQ8IZM8
HOGENOMQ8IZM8
Homologs : HomoloGeneZNF654
Homology/Alignments : Family Browser (UCSC)ZNF654
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF654 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF654
dbVarZNF654
ClinVarZNF654
1000_GenomesZNF654 
Exome Variant ServerZNF654
ExAC (Exome Aggregation Consortium)ZNF654 (select the gene name)
Genetic variants : HAPMAP55279
Genomic Variants (DGV)ZNF654 [DGVbeta]
DECIPHERZNF654 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF654 
Mutations
ICGC Data PortalZNF654 
TCGA Data PortalZNF654 
Broad Tumor PortalZNF654
OASIS PortalZNF654 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF654  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF654
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF654
DgiDB (Drug Gene Interaction Database)ZNF654
DoCM (Curated mutations)ZNF654 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF654 (select a term)
intoGenZNF654
Cancer3DZNF654(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF654
Genetic Testing Registry ZNF654
NextProtQ8IZM8 [Medical]
TSGene55279
GENETestsZNF654
Target ValidationZNF654
Huge Navigator ZNF654 [HugePedia]
snp3D : Map Gene to Disease55279
BioCentury BCIQZNF654
ClinGenZNF654
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55279
Chemical/Pharm GKB GenePA134923001
Clinical trialZNF654
Miscellaneous
canSAR (ICR)ZNF654 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF654
EVEXZNF654
GoPubMedZNF654
iHOPZNF654
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:06 CEST 2017

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