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ZNF655 (zinc finger protein 655)

Identity

Alias_symbol (synonym)VIK-1
VIK
Other alias
HGNC (Hugo) ZNF655
LocusID (NCBI) 79027
Atlas_Id 76308
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99558825 and ends at 99564705 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF655 (7q22.1) / LOC100289187 ()ZNF655 (7q22.1) / NUDCD3 (7p13)ZNF655 (7q22.1) / PAXIP1 (7q36.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF655   30899
Cards
Entrez_Gene (NCBI)ZNF655  79027  zinc finger protein 655
AliasesVIK; VIK-1
GeneCards (Weizmann)ZNF655
Ensembl hg19 (Hinxton)ENSG00000197343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197343 [Gene_View]  chr7:99558825-99564705 [Contig_View]  ZNF655 [Vega]
ICGC DataPortalENSG00000197343
TCGA cBioPortalZNF655
AceView (NCBI)ZNF655
Genatlas (Paris)ZNF655
WikiGenes79027
SOURCE (Princeton)ZNF655
Genetics Home Reference (NIH)ZNF655
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF655  -     chr7:99558825-99564705 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF655  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF655 - 7q22.1 [CytoView hg19]  ZNF655 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF655 [Mapview hg19]  ZNF655 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086023 AK027114 AK054750 AK057245 AK098231
RefSeq transcript (Entrez)NM_001009956 NM_001009957 NM_001009958 NM_001009960 NM_001083956 NM_001085366 NM_001085367 NM_001085368 NM_024061 NM_138494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF655
Cluster EST : UnigeneHs.599798 [ NCBI ]
CGAP (NCI)Hs.599798
Alternative Splicing GalleryENSG00000197343
Gene ExpressionZNF655 [ NCBI-GEO ]   ZNF655 [ EBI - ARRAY_EXPRESS ]   ZNF655 [ SEEK ]   ZNF655 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF655 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79027
GTEX Portal (Tissue expression)ZNF655
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N720   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N720  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N720
Splice isoforms : SwissVarQ8N720
PhosPhoSitePlusQ8N720
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF655
DMDM Disease mutations79027
Blocks (Seattle)ZNF655
SuperfamilyQ8N720
Human Protein AtlasENSG00000197343
Peptide AtlasQ8N720
HPRD11673
IPIIPI00292660   IPI00031606   IPI00925360   IPI00926754   IPI01022342   IPI00926294   IPI00552130   IPI00925463   IPI00925075   IPI00924648   IPI00924447   IPI00845470   IPI00927673   IPI00927430   IPI00927203   IPI00926960   
Protein Interaction databases
DIP (DOE-UCLA)Q8N720
IntAct (EBI)Q8N720
FunCoupENSG00000197343
BioGRIDZNF655
STRING (EMBL)ZNF655
ZODIACZNF655
Ontologies - Pathways
QuickGOQ8N720
Ontology : AmiGOmolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  negative regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBImolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  negative regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkZNF655
Atlas of Cancer Signalling NetworkZNF655
Wikipedia pathwaysZNF655
Orthology - Evolution
OrthoDB79027
GeneTree (enSembl)ENSG00000197343
Phylogenetic Trees/Animal Genes : TreeFamZNF655
HOVERGENQ8N720
HOGENOMQ8N720
Homologs : HomoloGeneZNF655
Homology/Alignments : Family Browser (UCSC)ZNF655
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF655 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF655
dbVarZNF655
ClinVarZNF655
1000_GenomesZNF655 
Exome Variant ServerZNF655
ExAC (Exome Aggregation Consortium)ZNF655 (select the gene name)
Genetic variants : HAPMAP79027
Genomic Variants (DGV)ZNF655 [DGVbeta]
DECIPHERZNF655 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF655 
Mutations
ICGC Data PortalZNF655 
TCGA Data PortalZNF655 
Broad Tumor PortalZNF655
OASIS PortalZNF655 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF655  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF655
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF655
DgiDB (Drug Gene Interaction Database)ZNF655
DoCM (Curated mutations)ZNF655 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF655 (select a term)
intoGenZNF655
Cancer3DZNF655(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF655
Genetic Testing Registry ZNF655
NextProtQ8N720 [Medical]
TSGene79027
GENETestsZNF655
Target ValidationZNF655
Huge Navigator ZNF655 [HugePedia]
snp3D : Map Gene to Disease79027
BioCentury BCIQZNF655
ClinGenZNF655
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79027
Chemical/Pharm GKB GenePA134883537
Clinical trialZNF655
Miscellaneous
canSAR (ICR)ZNF655 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF655
EVEXZNF655
GoPubMedZNF655
iHOPZNF655
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:59 CEST 2017

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