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ZNF658 (zinc finger protein 658)

Identity

Alias_symbol (synonym)MGC35232
DKFZp572C163
FLJ32813
Other alias-
HGNC (Hugo) ZNF658
LocusID (NCBI) 26149
Atlas_Id 76309
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 66900725 and ends at 66921429 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF658   25226
Cards
Entrez_Gene (NCBI)ZNF658  26149  zinc finger protein 658
Aliases
GeneCards (Weizmann)ZNF658
Ensembl hg19 (Hinxton)ENSG00000274349 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274349 [Gene_View]  chr9:66900725-66921429 [Contig_View]  ZNF658 [Vega]
ICGC DataPortalENSG00000274349
TCGA cBioPortalZNF658
AceView (NCBI)ZNF658
Genatlas (Paris)ZNF658
WikiGenes26149
SOURCE (Princeton)ZNF658
Genetics Home Reference (NIH)ZNF658
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF658  -     chr9:66900725-66921429 +  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF658  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblZNF658 - 9q21.11 [CytoView hg19]  ZNF658 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIZNF658 [Mapview hg19]  ZNF658 [Mapview hg38]
OMIM616290   
Gene and transcription
Genbank (Entrez)AA657471 AI123536 AI308081 AK022636 AK024222
RefSeq transcript (Entrez)NM_001317916 NM_033160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF658
Cluster EST : UnigeneHs.522147 [ NCBI ]
CGAP (NCI)Hs.522147
Alternative Splicing GalleryENSG00000274349
Gene ExpressionZNF658 [ NCBI-GEO ]   ZNF658 [ EBI - ARRAY_EXPRESS ]   ZNF658 [ SEEK ]   ZNF658 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF658 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26149
GTEX Portal (Tissue expression)ZNF658
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TYW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TYW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TYW1
Splice isoforms : SwissVarQ5TYW1
PhosPhoSitePlusQ5TYW1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF658
DMDM Disease mutations26149
Blocks (Seattle)ZNF658
SuperfamilyQ5TYW1
Human Protein AtlasENSG00000274349
Peptide AtlasQ5TYW1
HPRD11342
IPIIPI00942348   IPI00829737   
Protein Interaction databases
DIP (DOE-UCLA)Q5TYW1
IntAct (EBI)Q5TYW1
FunCoupENSG00000274349
BioGRIDZNF658
STRING (EMBL)ZNF658
ZODIACZNF658
Ontologies - Pathways
QuickGOQ5TYW1
Ontology : AmiGOtranscription regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  ribosome biogenesis  negative regulation of transcription, DNA-templated  metal ion binding  cellular response to zinc ion  
Ontology : EGO-EBItranscription regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  ribosome biogenesis  negative regulation of transcription, DNA-templated  metal ion binding  cellular response to zinc ion  
NDEx NetworkZNF658
Atlas of Cancer Signalling NetworkZNF658
Wikipedia pathwaysZNF658
Orthology - Evolution
OrthoDB26149
GeneTree (enSembl)ENSG00000274349
Phylogenetic Trees/Animal Genes : TreeFamZNF658
HOVERGENQ5TYW1
HOGENOMQ5TYW1
Homologs : HomoloGeneZNF658
Homology/Alignments : Family Browser (UCSC)ZNF658
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF658 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF658
dbVarZNF658
ClinVarZNF658
1000_GenomesZNF658 
Exome Variant ServerZNF658
ExAC (Exome Aggregation Consortium)ZNF658 (select the gene name)
Genetic variants : HAPMAP26149
Genomic Variants (DGV)ZNF658 [DGVbeta]
DECIPHERZNF658 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF658 
Mutations
ICGC Data PortalZNF658 
TCGA Data PortalZNF658 
Broad Tumor PortalZNF658
OASIS PortalZNF658 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF658
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF658
DgiDB (Drug Gene Interaction Database)ZNF658
DoCM (Curated mutations)ZNF658 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF658 (select a term)
intoGenZNF658
Cancer3DZNF658(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616290   
Orphanet
MedgenZNF658
Genetic Testing Registry ZNF658
NextProtQ5TYW1 [Medical]
TSGene26149
GENETestsZNF658
Target ValidationZNF658
Huge Navigator ZNF658 [HugePedia]
snp3D : Map Gene to Disease26149
BioCentury BCIQZNF658
ClinGenZNF658
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26149
Chemical/Pharm GKB GenePA134907871
Clinical trialZNF658
Miscellaneous
canSAR (ICR)ZNF658 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF658
EVEXZNF658
GoPubMedZNF658
iHOPZNF658
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:59 CEST 2017

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