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ZNF658B (zinc finger protein 658B, pseudogene)

Identity

Alias_nameszinc finger protein 658B
Other alias-
HGNC (Hugo) ZNF658B
LocusID (NCBI) 401509
Atlas_Id 76310
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 41589321 and ends at 41592207 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF658B   32033
Cards
Entrez_Gene (NCBI)ZNF658B  401509  zinc finger protein 658B, pseudogene
Aliases
GeneCards (Weizmann)ZNF658B
Ensembl hg19 (Hinxton) [Gene_View]  chr9:41589321-41592207 [Contig_View]  ZNF658B [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:41589321-41592207 [Contig_View]  ZNF658B [Vega]
TCGA cBioPortalZNF658B
AceView (NCBI)ZNF658B
Genatlas (Paris)ZNF658B
WikiGenes401509
SOURCE (Princeton)ZNF658B
Genetics Home Reference (NIH)ZNF658B
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF658B  -     chr9:41589321-41592207 -  9p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF658B  -     9p12   [Description]    (hg38-Dec_2013)
EnsemblZNF658B - 9p12 [CytoView hg19]  ZNF658B - 9p12 [CytoView hg38]
Mapping of homologs : NCBIZNF658B [Mapview hg19]  ZNF658B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095694 BC137089 BU685875 DA115965 DR001461
RefSeq transcript (Entrez)NM_001032297
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)ZNF658B
Cluster EST : UnigeneHs.730226 [ NCBI ]
CGAP (NCI)Hs.730226
Gene ExpressionZNF658B [ NCBI-GEO ]   ZNF658B [ EBI - ARRAY_EXPRESS ]   ZNF658B [ SEEK ]   ZNF658B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF658B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401509
GTEX Portal (Tissue expression)ZNF658B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4V348   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4V348  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4V348
Splice isoforms : SwissVarQ4V348
PhosPhoSitePlusQ4V348
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF658B
DMDM Disease mutations401509
Blocks (Seattle)ZNF658B
SuperfamilyQ4V348
Peptide AtlasQ4V348
IPIIPI00175313   
Protein Interaction databases
DIP (DOE-UCLA)Q4V348
IntAct (EBI)Q4V348
BioGRIDZNF658B
STRING (EMBL)ZNF658B
ZODIACZNF658B
Ontologies - Pathways
QuickGOQ4V348
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF658B
Atlas of Cancer Signalling NetworkZNF658B
Wikipedia pathwaysZNF658B
Orthology - Evolution
OrthoDB401509
Phylogenetic Trees/Animal Genes : TreeFamZNF658B
HOVERGENQ4V348
HOGENOMQ4V348
Homologs : HomoloGeneZNF658B
Homology/Alignments : Family Browser (UCSC)ZNF658B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF658B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF658B
dbVarZNF658B
ClinVarZNF658B
1000_GenomesZNF658B 
Exome Variant ServerZNF658B
ExAC (Exome Aggregation Consortium)ZNF658B (select the gene name)
Genetic variants : HAPMAP401509
Genomic Variants (DGV)ZNF658B [DGVbeta]
DECIPHER (Syndromes)9:41589321-41592207  
CONAN: Copy Number AnalysisZNF658B 
Mutations
ICGC Data PortalZNF658B 
TCGA Data PortalZNF658B 
Broad Tumor PortalZNF658B
OASIS PortalZNF658B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF658B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF658B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF658B
DgiDB (Drug Gene Interaction Database)ZNF658B
DoCM (Curated mutations)ZNF658B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF658B (select a term)
intoGenZNF658B
Cancer3DZNF658B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF658B
Genetic Testing Registry ZNF658B
NextProtQ4V348 [Medical]
TSGene401509
GENETestsZNF658B
Huge Navigator ZNF658B [HugePedia]
snp3D : Map Gene to Disease401509
BioCentury BCIQZNF658B
ClinGenZNF658B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401509
Chemical/Pharm GKB GenePA142670509
Clinical trialZNF658B
Miscellaneous
canSAR (ICR)ZNF658B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF658B
EVEXZNF658B
GoPubMedZNF658B
iHOPZNF658B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:35 CET 2017

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