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ZNF66 (zinc finger protein 66)

Identity

Alias_namesZNF66P
zinc finger protein 66, pseudogene
Alias_symbol (synonym)FLJ16537
Other alias
HGNC (Hugo) ZNF66
LocusID (NCBI) 7617
Atlas_Id 80088
Location 19_GL383573v1_alt  [Link to chromosome band 19]
Location_base_pair Starts at 113164 and ends at 131457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZNF66   13135
Cards
Entrez_Gene (NCBI)ZNF66  7617  zinc finger protein 66
AliasesZNF66P
GeneCards (Weizmann)ZNF66
Ensembl hg19 (Hinxton)ENSG00000160229 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160229 [Gene_View]  chr19_GL383573v1_alt:113164-131457 [Contig_View]  ZNF66 [Vega]
ICGC DataPortalENSG00000160229
TCGA cBioPortalZNF66
AceView (NCBI)ZNF66
Genatlas (Paris)ZNF66
WikiGenes7617
SOURCE (Princeton)ZNF66
Genetics Home Reference (NIH)ZNF66
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF66  -     chr19_GL383573v1_alt:113164-131457 +  19_GL383573v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF66  -     19_GL383573v1_alt   [Description]    (hg19-Feb_2009)
EnsemblZNF66 - 19_GL383573v1_alt [CytoView hg19]  ZNF66 - 19_GL383573v1_alt [CytoView hg38]
Mapping of homologs : NCBIZNF66 [Mapview hg19]  ZNF66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC067843 DA792668
RefSeq transcript (Entrez)NM_001009883 NM_001355197
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF66
Cluster EST : UnigeneHs.658748 [ NCBI ]
CGAP (NCI)Hs.658748
Alternative Splicing GalleryENSG00000160229
Gene ExpressionZNF66 [ NCBI-GEO ]   ZNF66 [ EBI - ARRAY_EXPRESS ]   ZNF66 [ SEEK ]   ZNF66 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7617
GTEX Portal (Tissue expression)ZNF66
Human Protein AtlasENSG00000160229-ZNF66 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN08
Splice isoforms : SwissVarQ6ZN08
PhosPhoSitePlusQ6ZN08
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)    ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF66
DMDM Disease mutations7617
Blocks (Seattle)ZNF66
SuperfamilyQ6ZN08
Human Protein Atlas [tissue]ENSG00000160229-ZNF66 [tissue]
Peptide AtlasQ6ZN08
IPIIPI00418556   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN08
IntAct (EBI)Q6ZN08
FunCoupENSG00000160229
BioGRIDZNF66
STRING (EMBL)ZNF66
ZODIACZNF66
Ontologies - Pathways
QuickGOQ6ZN08
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF66
Atlas of Cancer Signalling NetworkZNF66
Wikipedia pathwaysZNF66
Orthology - Evolution
OrthoDB7617
GeneTree (enSembl)ENSG00000160229
Phylogenetic Trees/Animal Genes : TreeFamZNF66
HOVERGENQ6ZN08
HOGENOMQ6ZN08
Homologs : HomoloGeneZNF66
Homology/Alignments : Family Browser (UCSC)ZNF66
Gene fusions - Rearrangements
Tumor Fusion PortalZNF66
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF66
dbVarZNF66
ClinVarZNF66
1000_GenomesZNF66 
Exome Variant ServerZNF66
ExAC (Exome Aggregation Consortium)ENSG00000160229
GNOMAD BrowserENSG00000160229
Genetic variants : HAPMAP7617
Genomic Variants (DGV)ZNF66 [DGVbeta]
DECIPHERZNF66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF66 
Mutations
ICGC Data PortalZNF66 
TCGA Data PortalZNF66 
Broad Tumor PortalZNF66
OASIS PortalZNF66 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF66
DgiDB (Drug Gene Interaction Database)ZNF66
DoCM (Curated mutations)ZNF66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF66 (select a term)
intoGenZNF66
Cancer3DZNF66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF66
MedgenZNF66
Genetic Testing Registry ZNF66
NextProtQ6ZN08 [Medical]
TSGene7617
GENETestsZNF66
Target ValidationZNF66
Huge Navigator ZNF66 [HugePedia]
snp3D : Map Gene to Disease7617
BioCentury BCIQZNF66
ClinGenZNF66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7617
Chemical/Pharm GKB GenePA37709
Clinical trialZNF66
Miscellaneous
canSAR (ICR)ZNF66 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF66
EVEXZNF66
GoPubMedZNF66
iHOPZNF66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:54 CET 2017

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