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ZNF660 (zinc finger protein 660)

Identity

Alias_symbol (synonym)FLJ36870
Other alias-
HGNC (Hugo) ZNF660
LocusID (NCBI) 285349
Atlas_Id 76311
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44584964 and ends at 44596065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF660 (3p21.31) / ARL6 (3q11.2)ZNF660 (3p21.31) / ZNF197 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF660   26720
Cards
Entrez_Gene (NCBI)ZNF660  285349  zinc finger protein 660
Aliases
GeneCards (Weizmann)ZNF660
Ensembl hg19 (Hinxton)ENSG00000144792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144792 [Gene_View]  chr3:44584964-44596065 [Contig_View]  ZNF660 [Vega]
ICGC DataPortalENSG00000144792
TCGA cBioPortalZNF660
AceView (NCBI)ZNF660
Genatlas (Paris)ZNF660
WikiGenes285349
SOURCE (Princeton)ZNF660
Genetics Home Reference (NIH)ZNF660
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF660  -     chr3:44584964-44596065 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF660  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF660 - 3p21.31 [CytoView hg19]  ZNF660 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF660 [Mapview hg19]  ZNF660 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094189 BC075094 BC075095 BX538171
RefSeq transcript (Entrez)NM_173658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF660
Cluster EST : UnigeneHs.733134 [ NCBI ]
CGAP (NCI)Hs.733134
Alternative Splicing GalleryENSG00000144792
Gene ExpressionZNF660 [ NCBI-GEO ]   ZNF660 [ EBI - ARRAY_EXPRESS ]   ZNF660 [ SEEK ]   ZNF660 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF660 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285349
GTEX Portal (Tissue expression)ZNF660
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6AZW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6AZW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6AZW8
Splice isoforms : SwissVarQ6AZW8
PhosPhoSitePlusQ6AZW8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF660
DMDM Disease mutations285349
Blocks (Seattle)ZNF660
SuperfamilyQ6AZW8
Human Protein AtlasENSG00000144792
Peptide AtlasQ6AZW8
HPRD08213
IPIIPI00167767   IPI00926291   IPI00926501   
Protein Interaction databases
DIP (DOE-UCLA)Q6AZW8
IntAct (EBI)Q6AZW8
FunCoupENSG00000144792
BioGRIDZNF660
STRING (EMBL)ZNF660
ZODIACZNF660
Ontologies - Pathways
QuickGOQ6AZW8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF660
Atlas of Cancer Signalling NetworkZNF660
Wikipedia pathwaysZNF660
Orthology - Evolution
OrthoDB285349
GeneTree (enSembl)ENSG00000144792
Phylogenetic Trees/Animal Genes : TreeFamZNF660
HOVERGENQ6AZW8
HOGENOMQ6AZW8
Homologs : HomoloGeneZNF660
Homology/Alignments : Family Browser (UCSC)ZNF660
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF660 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF660
dbVarZNF660
ClinVarZNF660
1000_GenomesZNF660 
Exome Variant ServerZNF660
ExAC (Exome Aggregation Consortium)ZNF660 (select the gene name)
Genetic variants : HAPMAP285349
Genomic Variants (DGV)ZNF660 [DGVbeta]
DECIPHERZNF660 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF660 
Mutations
ICGC Data PortalZNF660 
TCGA Data PortalZNF660 
Broad Tumor PortalZNF660
OASIS PortalZNF660 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF660  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF660
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF660
DgiDB (Drug Gene Interaction Database)ZNF660
DoCM (Curated mutations)ZNF660 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF660 (select a term)
intoGenZNF660
Cancer3DZNF660(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF660
Genetic Testing Registry ZNF660
NextProtQ6AZW8 [Medical]
TSGene285349
GENETestsZNF660
Target ValidationZNF660
Huge Navigator ZNF660 [HugePedia]
snp3D : Map Gene to Disease285349
BioCentury BCIQZNF660
ClinGenZNF660
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285349
Chemical/Pharm GKB GenePA134920595
Clinical trialZNF660
Miscellaneous
canSAR (ICR)ZNF660 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF660
EVEXZNF660
GoPubMedZNF660
iHOPZNF660
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:07 CEST 2017

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