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ZNF662 (zinc finger protein 662)

Identity

Alias_symbol (synonym)FLJ45880
Other alias-
HGNC (Hugo) ZNF662
LocusID (NCBI) 389114
Atlas_Id 76312
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42906166 and ends at 42919333 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF662   31930
Cards
Entrez_Gene (NCBI)ZNF662  389114  zinc finger protein 662
Aliases
GeneCards (Weizmann)ZNF662
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:42906166-42919333 [Contig_View]  ZNF662 [Vega]
TCGA cBioPortalZNF662
AceView (NCBI)ZNF662
Genatlas (Paris)ZNF662
WikiGenes389114
SOURCE (Princeton)ZNF662
Genetics Home Reference (NIH)ZNF662
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF662  -     chr3:42906166-42919333 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF662  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF662 - 3p22.1 [CytoView hg19]  ZNF662 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF662 [Mapview hg19]  ZNF662 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054699 AK090666 AK090754 AK127779 AK128676
RefSeq transcript (Entrez)NM_001134656 NM_207404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF662
Cluster EST : UnigeneHs.720173 [ NCBI ]
CGAP (NCI)Hs.720173
Gene ExpressionZNF662 [ NCBI-GEO ]   ZNF662 [ EBI - ARRAY_EXPRESS ]   ZNF662 [ SEEK ]   ZNF662 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF662 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389114
GTEX Portal (Tissue expression)ZNF662
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS27
Splice isoforms : SwissVarQ6ZS27
PhosPhoSitePlusQ6ZS27
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF662
DMDM Disease mutations389114
Blocks (Seattle)ZNF662
SuperfamilyQ6ZS27
Peptide AtlasQ6ZS27
HPRD13516
IPIIPI00397964   IPI00909217   IPI00883949   IPI01009150   IPI00925459   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS27
IntAct (EBI)Q6ZS27
BioGRIDZNF662
STRING (EMBL)ZNF662
ZODIACZNF662
Ontologies - Pathways
QuickGOQ6ZS27
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF662
Atlas of Cancer Signalling NetworkZNF662
Wikipedia pathwaysZNF662
Orthology - Evolution
OrthoDB389114
Phylogenetic Trees/Animal Genes : TreeFamZNF662
HOVERGENQ6ZS27
HOGENOMQ6ZS27
Homologs : HomoloGeneZNF662
Homology/Alignments : Family Browser (UCSC)ZNF662
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF662 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF662
dbVarZNF662
ClinVarZNF662
1000_GenomesZNF662 
Exome Variant ServerZNF662
ExAC (Exome Aggregation Consortium)ZNF662 (select the gene name)
Genetic variants : HAPMAP389114
Genomic Variants (DGV)ZNF662 [DGVbeta]
DECIPHERZNF662 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF662 
Mutations
ICGC Data PortalZNF662 
TCGA Data PortalZNF662 
Broad Tumor PortalZNF662
OASIS PortalZNF662 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF662  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF662
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF662
DgiDB (Drug Gene Interaction Database)ZNF662
DoCM (Curated mutations)ZNF662 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF662 (select a term)
intoGenZNF662
Cancer3DZNF662(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF662
Genetic Testing Registry ZNF662
NextProtQ6ZS27 [Medical]
TSGene389114
GENETestsZNF662
Target ValidationZNF662
Huge Navigator ZNF662 [HugePedia]
snp3D : Map Gene to Disease389114
BioCentury BCIQZNF662
ClinGenZNF662
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389114
Chemical/Pharm GKB GenePA142670510
Clinical trialZNF662
Miscellaneous
canSAR (ICR)ZNF662 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF662
EVEXZNF662
GoPubMedZNF662
iHOPZNF662
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:07 CEST 2017

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