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ZNF668 (zinc finger protein 668)

Identity

Alias_symbol (synonym)FLJ13479
Other alias-
HGNC (Hugo) ZNF668
LocusID (NCBI) 79759
Atlas_Id 52526
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31060848 and ends at 31073502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DLGAP4 (20q11.23) / ZNF668 (16p11.2)SPNS1 (16p11.2) / ZNF668 (16p11.2)SPNS1 16p11.2 / ZNF668 16p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF668   25821
Cards
Entrez_Gene (NCBI)ZNF668  79759  zinc finger protein 668
Aliases
GeneCards (Weizmann)ZNF668
Ensembl hg19 (Hinxton)ENSG00000167394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167394 [Gene_View]  chr16:31060848-31073502 [Contig_View]  ZNF668 [Vega]
ICGC DataPortalENSG00000167394
TCGA cBioPortalZNF668
AceView (NCBI)ZNF668
Genatlas (Paris)ZNF668
WikiGenes79759
SOURCE (Princeton)ZNF668
Genetics Home Reference (NIH)ZNF668
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF668  -     chr16:31060848-31073502 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF668  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF668 - 16p11.2 [CytoView hg19]  ZNF668 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF668 [Mapview hg19]  ZNF668 [Mapview hg38]
OMIM617103   
Gene and transcription
Genbank (Entrez)AB209710 AK023541 AK027398 AK289899 AK308239
RefSeq transcript (Entrez)NM_001172668 NM_001172669 NM_001172670 NM_024706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF668
Cluster EST : UnigeneHs.102928 [ NCBI ]
CGAP (NCI)Hs.102928
Alternative Splicing GalleryENSG00000167394
Gene ExpressionZNF668 [ NCBI-GEO ]   ZNF668 [ EBI - ARRAY_EXPRESS ]   ZNF668 [ SEEK ]   ZNF668 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF668 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79759
GTEX Portal (Tissue expression)ZNF668
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K58
Splice isoforms : SwissVarQ96K58
PhosPhoSitePlusQ96K58
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF668
DMDM Disease mutations79759
Blocks (Seattle)ZNF668
SuperfamilyQ96K58
Human Protein AtlasENSG00000167394
Peptide AtlasQ96K58
HPRD07828
IPIIPI00171118   IPI00644398   IPI00955764   IPI00970834   IPI00791748   IPI00791206   IPI00795905   
Protein Interaction databases
DIP (DOE-UCLA)Q96K58
IntAct (EBI)Q96K58
FunCoupENSG00000167394
BioGRIDZNF668
STRING (EMBL)ZNF668
ZODIACZNF668
Ontologies - Pathways
QuickGOQ96K58
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF668
Atlas of Cancer Signalling NetworkZNF668
Wikipedia pathwaysZNF668
Orthology - Evolution
OrthoDB79759
GeneTree (enSembl)ENSG00000167394
Phylogenetic Trees/Animal Genes : TreeFamZNF668
HOVERGENQ96K58
HOGENOMQ96K58
Homologs : HomoloGeneZNF668
Homology/Alignments : Family Browser (UCSC)ZNF668
Gene fusions - Rearrangements
Fusion : MitelmanSPNS1/ZNF668 [16p11.2/16p11.2]  [t(16;16)(p11;p11)]  
Fusion: TCGASPNS1 16p11.2 ZNF668 16p11.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF668 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF668
dbVarZNF668
ClinVarZNF668
1000_GenomesZNF668 
Exome Variant ServerZNF668
ExAC (Exome Aggregation Consortium)ZNF668 (select the gene name)
Genetic variants : HAPMAP79759
Genomic Variants (DGV)ZNF668 [DGVbeta]
DECIPHERZNF668 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF668 
Mutations
ICGC Data PortalZNF668 
TCGA Data PortalZNF668 
Broad Tumor PortalZNF668
OASIS PortalZNF668 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF668  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF668
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF668
DgiDB (Drug Gene Interaction Database)ZNF668
DoCM (Curated mutations)ZNF668 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF668 (select a term)
intoGenZNF668
Cancer3DZNF668(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617103   
Orphanet
MedgenZNF668
Genetic Testing Registry ZNF668
NextProtQ96K58 [Medical]
TSGene79759
GENETestsZNF668
Target ValidationZNF668
Huge Navigator ZNF668 [HugePedia]
snp3D : Map Gene to Disease79759
BioCentury BCIQZNF668
ClinGenZNF668
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79759
Chemical/Pharm GKB GenePA142670515
Clinical trialZNF668
Miscellaneous
canSAR (ICR)ZNF668 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF668
EVEXZNF668
GoPubMedZNF668
iHOPZNF668
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:54 CEST 2017

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