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ZNF669 (zinc finger protein 669)

Identity

Alias_symbol (synonym)FLJ12606
Other alias-
HGNC (Hugo) ZNF669
LocusID (NCBI) 79862
Atlas_Id 76318
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247099962 and ends at 247104372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
REPS1 (6q24.1) / ZNF669 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF669   25736
Cards
Entrez_Gene (NCBI)ZNF669  79862  zinc finger protein 669
Aliases
GeneCards (Weizmann)ZNF669
Ensembl hg19 (Hinxton)ENSG00000188295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188295 [Gene_View]  chr1:247099962-247104372 [Contig_View]  ZNF669 [Vega]
ICGC DataPortalENSG00000188295
TCGA cBioPortalZNF669
AceView (NCBI)ZNF669
Genatlas (Paris)ZNF669
WikiGenes79862
SOURCE (Princeton)ZNF669
Genetics Home Reference (NIH)ZNF669
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF669  -     chr1:247099962-247104372 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF669  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblZNF669 - 1q44 [CytoView hg19]  ZNF669 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIZNF669 [Mapview hg19]  ZNF669 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022668 AK056020 BC015312 CA447495
RefSeq transcript (Entrez)NM_001142572 NM_024804
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF669
Cluster EST : UnigeneHs.163754 [ NCBI ]
CGAP (NCI)Hs.163754
Alternative Splicing GalleryENSG00000188295
Gene ExpressionZNF669 [ NCBI-GEO ]   ZNF669 [ EBI - ARRAY_EXPRESS ]   ZNF669 [ SEEK ]   ZNF669 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF669 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79862
GTEX Portal (Tissue expression)ZNF669
Human Protein AtlasENSG00000188295-ZNF669 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BR6
Splice isoforms : SwissVarQ96BR6
PhosPhoSitePlusQ96BR6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF669
DMDM Disease mutations79862
Blocks (Seattle)ZNF669
SuperfamilyQ96BR6
Human Protein Atlas [tissue]ENSG00000188295-ZNF669 [tissue]
Peptide AtlasQ96BR6
HPRD07783
IPIIPI00549276   IPI00844441   IPI00479717   IPI00903301   IPI00917199   
Protein Interaction databases
DIP (DOE-UCLA)Q96BR6
IntAct (EBI)Q96BR6
FunCoupENSG00000188295
BioGRIDZNF669
STRING (EMBL)ZNF669
ZODIACZNF669
Ontologies - Pathways
QuickGOQ96BR6
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF669
Atlas of Cancer Signalling NetworkZNF669
Wikipedia pathwaysZNF669
Orthology - Evolution
OrthoDB79862
GeneTree (enSembl)ENSG00000188295
Phylogenetic Trees/Animal Genes : TreeFamZNF669
HOVERGENQ96BR6
HOGENOMQ96BR6
Homologs : HomoloGeneZNF669
Homology/Alignments : Family Browser (UCSC)ZNF669
Gene fusions - Rearrangements
Tumor Fusion PortalZNF669
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF669 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF669
dbVarZNF669
ClinVarZNF669
1000_GenomesZNF669 
Exome Variant ServerZNF669
ExAC (Exome Aggregation Consortium)ENSG00000188295
GNOMAD BrowserENSG00000188295
Genetic variants : HAPMAP79862
Genomic Variants (DGV)ZNF669 [DGVbeta]
DECIPHERZNF669 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF669 
Mutations
ICGC Data PortalZNF669 
TCGA Data PortalZNF669 
Broad Tumor PortalZNF669
OASIS PortalZNF669 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF669  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF669
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF669
DgiDB (Drug Gene Interaction Database)ZNF669
DoCM (Curated mutations)ZNF669 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF669 (select a term)
intoGenZNF669
Cancer3DZNF669(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF669
MedgenZNF669
Genetic Testing Registry ZNF669
NextProtQ96BR6 [Medical]
TSGene79862
GENETestsZNF669
Target ValidationZNF669
Huge Navigator ZNF669 [HugePedia]
snp3D : Map Gene to Disease79862
BioCentury BCIQZNF669
ClinGenZNF669
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79862
Chemical/Pharm GKB GenePA142670516
Clinical trialZNF669
Miscellaneous
canSAR (ICR)ZNF669 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF669
EVEXZNF669
GoPubMedZNF669
iHOPZNF669
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:23:39 CET 2017

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