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ZNF671 (zinc finger protein 671)

Identity

Alias_symbol (synonym)FLJ23506
Other alias-
HGNC (Hugo) ZNF671
LocusID (NCBI) 79891
Atlas_Id 55912
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57719747 and ends at 57727624 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF671 (19q13.43) / PRRG2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF671   26279
Cards
Entrez_Gene (NCBI)ZNF671  79891  zinc finger protein 671
Aliases
GeneCards (Weizmann)ZNF671
Ensembl hg19 (Hinxton)ENSG00000083814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083814 [Gene_View]  chr19:57719747-57727624 [Contig_View]  ZNF671 [Vega]
ICGC DataPortalENSG00000083814
TCGA cBioPortalZNF671
AceView (NCBI)ZNF671
Genatlas (Paris)ZNF671
WikiGenes79891
SOURCE (Princeton)ZNF671
Genetics Home Reference (NIH)ZNF671
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF671  -     chr19:57719747-57727624 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF671  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF671 - 19q13.43 [CytoView hg19]  ZNF671 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF671 [Mapview hg19]  ZNF671 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027159 AK091421 AK225665 AK293680 AK310074
RefSeq transcript (Entrez)NM_001321375 NM_001321376 NM_024833
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF671
Cluster EST : UnigeneHs.180402 [ NCBI ]
CGAP (NCI)Hs.180402
Alternative Splicing GalleryENSG00000083814
Gene ExpressionZNF671 [ NCBI-GEO ]   ZNF671 [ EBI - ARRAY_EXPRESS ]   ZNF671 [ SEEK ]   ZNF671 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF671 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79891
GTEX Portal (Tissue expression)ZNF671
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAW3
Splice isoforms : SwissVarQ8TAW3
PhosPhoSitePlusQ8TAW3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF671
DMDM Disease mutations79891
Blocks (Seattle)ZNF671
SuperfamilyQ8TAW3
Human Protein AtlasENSG00000083814
Peptide AtlasQ8TAW3
HPRD08031
IPIIPI01018610   IPI00929396   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAW3
IntAct (EBI)Q8TAW3
FunCoupENSG00000083814
BioGRIDZNF671
STRING (EMBL)ZNF671
ZODIACZNF671
Ontologies - Pathways
QuickGOQ8TAW3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF671
Atlas of Cancer Signalling NetworkZNF671
Wikipedia pathwaysZNF671
Orthology - Evolution
OrthoDB79891
GeneTree (enSembl)ENSG00000083814
Phylogenetic Trees/Animal Genes : TreeFamZNF671
HOVERGENQ8TAW3
HOGENOMQ8TAW3
Homologs : HomoloGeneZNF671
Homology/Alignments : Family Browser (UCSC)ZNF671
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF671 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF671
dbVarZNF671
ClinVarZNF671
1000_GenomesZNF671 
Exome Variant ServerZNF671
ExAC (Exome Aggregation Consortium)ZNF671 (select the gene name)
Genetic variants : HAPMAP79891
Genomic Variants (DGV)ZNF671 [DGVbeta]
DECIPHERZNF671 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF671 
Mutations
ICGC Data PortalZNF671 
TCGA Data PortalZNF671 
Broad Tumor PortalZNF671
OASIS PortalZNF671 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF671  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF671
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF671
DgiDB (Drug Gene Interaction Database)ZNF671
DoCM (Curated mutations)ZNF671 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF671 (select a term)
intoGenZNF671
Cancer3DZNF671(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF671
Genetic Testing Registry ZNF671
NextProtQ8TAW3 [Medical]
TSGene79891
GENETestsZNF671
Target ValidationZNF671
Huge Navigator ZNF671 [HugePedia]
snp3D : Map Gene to Disease79891
BioCentury BCIQZNF671
ClinGenZNF671
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79891
Chemical/Pharm GKB GenePA142670518
Clinical trialZNF671
Miscellaneous
canSAR (ICR)ZNF671 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF671
EVEXZNF671
GoPubMedZNF671
iHOPZNF671
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:54 CEST 2017

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