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ZNF672 (zinc finger protein 672)

Identity

Alias_symbol (synonym)FLJ22301
Other alias-
HGNC (Hugo) ZNF672
LocusID (NCBI) 79894
Atlas_Id 76322
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248838178 and ends at 248849517 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF672 (1q44) / ECE1 (1p36.12)ZNF672 (1q44) / NME7 (1q24.2)ZNF672 (1q44) / ZNF672 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF672   26179
Cards
Entrez_Gene (NCBI)ZNF672  79894  zinc finger protein 672
Aliases
GeneCards (Weizmann)ZNF672
Ensembl hg19 (Hinxton)ENSG00000171161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171161 [Gene_View]  chr1:248838178-248849517 [Contig_View]  ZNF672 [Vega]
ICGC DataPortalENSG00000171161
TCGA cBioPortalZNF672
AceView (NCBI)ZNF672
Genatlas (Paris)ZNF672
WikiGenes79894
SOURCE (Princeton)ZNF672
Genetics Home Reference (NIH)ZNF672
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF672  -     chr1:248838178-248849517 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF672  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblZNF672 - 1q44 [CytoView hg19]  ZNF672 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIZNF672 [Mapview hg19]  ZNF672 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI127478 AK025954 AK027476 AK027679 AK298016
RefSeq transcript (Entrez)NM_024836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF672
Cluster EST : UnigeneHs.521151 [ NCBI ]
CGAP (NCI)Hs.521151
Alternative Splicing GalleryENSG00000171161
Gene ExpressionZNF672 [ NCBI-GEO ]   ZNF672 [ EBI - ARRAY_EXPRESS ]   ZNF672 [ SEEK ]   ZNF672 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF672 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79894
GTEX Portal (Tissue expression)ZNF672
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ499Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ499Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ499Z4
Splice isoforms : SwissVarQ499Z4
PhosPhoSitePlusQ499Z4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF672
DMDM Disease mutations79894
Blocks (Seattle)ZNF672
SuperfamilyQ499Z4
Human Protein AtlasENSG00000171161
Peptide AtlasQ499Z4
HPRD07983
IPIIPI00016285   IPI00744613   IPI00968133   IPI00967894   
Protein Interaction databases
DIP (DOE-UCLA)Q499Z4
IntAct (EBI)Q499Z4
FunCoupENSG00000171161
BioGRIDZNF672
STRING (EMBL)ZNF672
ZODIACZNF672
Ontologies - Pathways
QuickGOQ499Z4
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF672
Atlas of Cancer Signalling NetworkZNF672
Wikipedia pathwaysZNF672
Orthology - Evolution
OrthoDB79894
GeneTree (enSembl)ENSG00000171161
Phylogenetic Trees/Animal Genes : TreeFamZNF672
HOVERGENQ499Z4
HOGENOMQ499Z4
Homologs : HomoloGeneZNF672
Homology/Alignments : Family Browser (UCSC)ZNF672
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF672 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF672
dbVarZNF672
ClinVarZNF672
1000_GenomesZNF672 
Exome Variant ServerZNF672
ExAC (Exome Aggregation Consortium)ZNF672 (select the gene name)
Genetic variants : HAPMAP79894
Genomic Variants (DGV)ZNF672 [DGVbeta]
DECIPHERZNF672 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF672 
Mutations
ICGC Data PortalZNF672 
TCGA Data PortalZNF672 
Broad Tumor PortalZNF672
OASIS PortalZNF672 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF672  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF672
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF672
DgiDB (Drug Gene Interaction Database)ZNF672
DoCM (Curated mutations)ZNF672 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF672 (select a term)
intoGenZNF672
Cancer3DZNF672(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF672
Genetic Testing Registry ZNF672
NextProtQ499Z4 [Medical]
TSGene79894
GENETestsZNF672
Target ValidationZNF672
Huge Navigator ZNF672 [HugePedia]
snp3D : Map Gene to Disease79894
BioCentury BCIQZNF672
ClinGenZNF672
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79894
Chemical/Pharm GKB GenePA142670473
Clinical trialZNF672
Miscellaneous
canSAR (ICR)ZNF672 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF672
EVEXZNF672
GoPubMedZNF672
iHOPZNF672
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:09 CEST 2017

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