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ZNF676 (zinc finger protein 676)

Identity

Other alias-
HGNC (Hugo) ZNF676
LocusID (NCBI) 163223
Atlas_Id 76325
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22179101 and ends at 22196951 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF676   20429
Cards
Entrez_Gene (NCBI)ZNF676  163223  zinc finger protein 676
Aliases
GeneCards (Weizmann)ZNF676
Ensembl hg19 (Hinxton)ENSG00000196109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196109 [Gene_View]  chr19:22179101-22196951 [Contig_View]  ZNF676 [Vega]
ICGC DataPortalENSG00000196109
TCGA cBioPortalZNF676
AceView (NCBI)ZNF676
Genatlas (Paris)ZNF676
WikiGenes163223
SOURCE (Princeton)ZNF676
Genetics Home Reference (NIH)ZNF676
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF676  -     chr19:22179101-22196951 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF676  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF676 - 19p12 [CytoView hg19]  ZNF676 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF676 [Mapview hg19]  ZNF676 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097798 BX281304
RefSeq transcript (Entrez)NM_001001411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF676
Cluster EST : UnigeneHs.55452 [ NCBI ]
CGAP (NCI)Hs.55452
Alternative Splicing GalleryENSG00000196109
Gene ExpressionZNF676 [ NCBI-GEO ]   ZNF676 [ EBI - ARRAY_EXPRESS ]   ZNF676 [ SEEK ]   ZNF676 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF676 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163223
GTEX Portal (Tissue expression)ZNF676
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7Q3
Splice isoforms : SwissVarQ8N7Q3
PhosPhoSitePlusQ8N7Q3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF676
DMDM Disease mutations163223
Blocks (Seattle)ZNF676
SuperfamilyQ8N7Q3
Human Protein AtlasENSG00000196109
Peptide AtlasQ8N7Q3
HPRD17313
IPIIPI00167265   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7Q3
IntAct (EBI)Q8N7Q3
FunCoupENSG00000196109
BioGRIDZNF676
STRING (EMBL)ZNF676
ZODIACZNF676
Ontologies - Pathways
QuickGOQ8N7Q3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF676
Atlas of Cancer Signalling NetworkZNF676
Wikipedia pathwaysZNF676
Orthology - Evolution
OrthoDB163223
GeneTree (enSembl)ENSG00000196109
Phylogenetic Trees/Animal Genes : TreeFamZNF676
HOVERGENQ8N7Q3
HOGENOMQ8N7Q3
Homologs : HomoloGeneZNF676
Homology/Alignments : Family Browser (UCSC)ZNF676
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF676 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF676
dbVarZNF676
ClinVarZNF676
1000_GenomesZNF676 
Exome Variant ServerZNF676
ExAC (Exome Aggregation Consortium)ZNF676 (select the gene name)
Genetic variants : HAPMAP163223
Genomic Variants (DGV)ZNF676 [DGVbeta]
DECIPHERZNF676 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF676 
Mutations
ICGC Data PortalZNF676 
TCGA Data PortalZNF676 
Broad Tumor PortalZNF676
OASIS PortalZNF676 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF676  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF676
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF676
DgiDB (Drug Gene Interaction Database)ZNF676
DoCM (Curated mutations)ZNF676 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF676 (select a term)
intoGenZNF676
Cancer3DZNF676(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF676
Genetic Testing Registry ZNF676
NextProtQ8N7Q3 [Medical]
TSGene163223
GENETestsZNF676
Target ValidationZNF676
Huge Navigator ZNF676 [HugePedia]
snp3D : Map Gene to Disease163223
BioCentury BCIQZNF676
ClinGenZNF676
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163223
Chemical/Pharm GKB GenePA142670477
Clinical trialZNF676
Miscellaneous
canSAR (ICR)ZNF676 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF676
EVEXZNF676
GoPubMedZNF676
iHOPZNF676
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:02 CEST 2017

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