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ZNF677 (zinc finger protein 677)

Identity

Alias_symbol (synonym)MGC48625
Other alias-
HGNC (Hugo) ZNF677
LocusID (NCBI) 342926
Atlas_Id 55610
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53235381 and ends at 53254850 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF677   28730
Cards
Entrez_Gene (NCBI)ZNF677  342926  zinc finger protein 677
Aliases
GeneCards (Weizmann)ZNF677
Ensembl hg19 (Hinxton)ENSG00000197928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197928 [Gene_View]  chr19:53235381-53254850 [Contig_View]  ZNF677 [Vega]
ICGC DataPortalENSG00000197928
TCGA cBioPortalZNF677
AceView (NCBI)ZNF677
Genatlas (Paris)ZNF677
WikiGenes342926
SOURCE (Princeton)ZNF677
Genetics Home Reference (NIH)ZNF677
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF677  -     chr19:53235381-53254850 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF677  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF677 - 19q13.42 [CytoView hg19]  ZNF677 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF677 [Mapview hg19]  ZNF677 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026366 AK308120 BC029855 BC050038 BX648243
RefSeq transcript (Entrez)NM_001317998 NM_182609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF677
Cluster EST : UnigeneHs.20506 [ NCBI ]
CGAP (NCI)Hs.20506
Alternative Splicing GalleryENSG00000197928
Gene ExpressionZNF677 [ NCBI-GEO ]   ZNF677 [ EBI - ARRAY_EXPRESS ]   ZNF677 [ SEEK ]   ZNF677 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF677 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342926
GTEX Portal (Tissue expression)ZNF677
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XU0
Splice isoforms : SwissVarQ86XU0
PhosPhoSitePlusQ86XU0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF677
DMDM Disease mutations342926
Blocks (Seattle)ZNF677
SuperfamilyQ86XU0
Human Protein AtlasENSG00000197928
Peptide AtlasQ86XU0
HPRD14658
IPIIPI00334201   IPI00807699   IPI00978956   
Protein Interaction databases
DIP (DOE-UCLA)Q86XU0
IntAct (EBI)Q86XU0
FunCoupENSG00000197928
BioGRIDZNF677
STRING (EMBL)ZNF677
ZODIACZNF677
Ontologies - Pathways
QuickGOQ86XU0
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF677
Atlas of Cancer Signalling NetworkZNF677
Wikipedia pathwaysZNF677
Orthology - Evolution
OrthoDB342926
GeneTree (enSembl)ENSG00000197928
Phylogenetic Trees/Animal Genes : TreeFamZNF677
HOVERGENQ86XU0
HOGENOMQ86XU0
Homologs : HomoloGeneZNF677
Homology/Alignments : Family Browser (UCSC)ZNF677
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF677 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF677
dbVarZNF677
ClinVarZNF677
1000_GenomesZNF677 
Exome Variant ServerZNF677
ExAC (Exome Aggregation Consortium)ZNF677 (select the gene name)
Genetic variants : HAPMAP342926
Genomic Variants (DGV)ZNF677 [DGVbeta]
DECIPHERZNF677 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF677 
Mutations
ICGC Data PortalZNF677 
TCGA Data PortalZNF677 
Broad Tumor PortalZNF677
OASIS PortalZNF677 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF677  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF677
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF677
DgiDB (Drug Gene Interaction Database)ZNF677
DoCM (Curated mutations)ZNF677 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF677 (select a term)
intoGenZNF677
Cancer3DZNF677(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF677
Genetic Testing Registry ZNF677
NextProtQ86XU0 [Medical]
TSGene342926
GENETestsZNF677
Target ValidationZNF677
Huge Navigator ZNF677 [HugePedia]
snp3D : Map Gene to Disease342926
BioCentury BCIQZNF677
ClinGenZNF677
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342926
Chemical/Pharm GKB GenePA142670478
Clinical trialZNF677
Miscellaneous
canSAR (ICR)ZNF677 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF677
EVEXZNF677
GoPubMedZNF677
iHOPZNF677
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:55 CEST 2017

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