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ZNF678 (zinc finger protein 678)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF678
HGNC Alias symbMGC42493
HGNC Alias namehypothetical protein MGC42493
LocusID (NCBI) 339500
Atlas_Id 76327
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 227563556 and ends at 227662461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC42BPA (1q42.13) / ZNF678 (1q42.13)ZNF678 (1q42.13) / SERPINA5 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF678   28652
Cards
Entrez_Gene (NCBI)ZNF678    zinc finger protein 678
Aliases
GeneCards (Weizmann)ZNF678
Ensembl hg19 (Hinxton)ENSG00000181450 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181450 [Gene_View]  ENSG00000181450 [Sequence]  chr1:227563556-227662461 [Contig_View]  ZNF678 [Vega]
ICGC DataPortalENSG00000181450
TCGA cBioPortalZNF678
AceView (NCBI)ZNF678
Genatlas (Paris)ZNF678
SOURCE (Princeton)ZNF678
Genetics Home Reference (NIH)ZNF678
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF678  -     chr1:227563556-227662461 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF678  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathZNF678 - 1q42.13 [CytoView hg19]  ZNF678 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000181450
Genome Data Viewer NCBIZNF678 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB074269 AI655010 AK026475 AK307248 AK311313
RefSeq transcript (Entrez)NM_001367909 NM_001367910 NM_001367911 NM_032755 NM_178549
Consensus coding sequences : CCDS (NCBI)ZNF678
Gene ExpressionZNF678 [ NCBI-GEO ]   ZNF678 [ EBI - ARRAY_EXPRESS ]   ZNF678 [ SEEK ]   ZNF678 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF678 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF678 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339500
GTEX Portal (Tissue expression)ZNF678
Human Protein AtlasENSG00000181450-ZNF678 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SXM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SXM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SXM1
PhosPhoSitePlusQ5SXM1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF678
SuperfamilyQ5SXM1
AlphaFold pdb e-kbQ5SXM1   
Human Protein Atlas [tissue]ENSG00000181450-ZNF678 [tissue]
HPRD14622
Protein Interaction databases
DIP (DOE-UCLA)Q5SXM1
IntAct (EBI)Q5SXM1
BioGRIDZNF678
STRING (EMBL)ZNF678
ZODIACZNF678
Ontologies - Pathways
QuickGOQ5SXM1
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF678
Atlas of Cancer Signalling NetworkZNF678
Wikipedia pathwaysZNF678
Orthology - Evolution
OrthoDB339500
GeneTree (enSembl)ENSG00000181450
Phylogenetic Trees/Animal Genes : TreeFamZNF678
Homologs : HomoloGeneZNF678
Homology/Alignments : Family Browser (UCSC)ZNF678
Gene fusions - Rearrangements
Fusion : QuiverZNF678
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF678 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF678
dbVarZNF678
ClinVarZNF678
MonarchZNF678
1000_GenomesZNF678 
Exome Variant ServerZNF678
GNOMAD BrowserENSG00000181450
Varsome BrowserZNF678
ACMGZNF678 variants
VarityQ5SXM1
Genomic Variants (DGV)ZNF678 [DGVbeta]
DECIPHERZNF678 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF678 
Mutations
ICGC Data PortalZNF678 
TCGA Data PortalZNF678 
Broad Tumor PortalZNF678
OASIS PortalZNF678 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF678  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF678
Mutations and Diseases : HGMDZNF678
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF678
DgiDB (Drug Gene Interaction Database)ZNF678
DoCM (Curated mutations)ZNF678
CIViC (Clinical Interpretations of Variants in Cancer)ZNF678
Cancer3DZNF678
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF678
MedgenZNF678
Genetic Testing Registry ZNF678
NextProtQ5SXM1 [Medical]
GENETestsZNF678
Target ValidationZNF678
Huge Navigator ZNF678 [HugePedia]
ClinGenZNF678
Clinical trials, drugs, therapy
MyCancerGenomeZNF678
Protein Interactions : CTDZNF678
Pharm GKB GenePA142670479
PharosQ5SXM1
Clinical trialZNF678
Miscellaneous
canSAR (ICR)ZNF678
HarmonizomeZNF678
DataMed IndexZNF678
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF678
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:13 CEST 2021

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