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ZNF678 (zinc finger protein 678)

Identity

Alias_symbol (synonym)MGC42493
Other alias-
HGNC (Hugo) ZNF678
LocusID (NCBI) 339500
Atlas_Id 76327
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 227563519 and ends at 227662463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDC42BPA (1q42.13) / ZNF678 (1q42.13)ZNF678 (1q42.13) / SERPINA5 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF678   28652
Cards
Entrez_Gene (NCBI)ZNF678  339500  zinc finger protein 678
Aliases
GeneCards (Weizmann)ZNF678
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:227563519-227662463 [Contig_View]  ZNF678 [Vega]
TCGA cBioPortalZNF678
AceView (NCBI)ZNF678
Genatlas (Paris)ZNF678
WikiGenes339500
SOURCE (Princeton)ZNF678
Genetics Home Reference (NIH)ZNF678
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF678  -     chr1:227563519-227662463 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF678  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblZNF678 - 1q42.13 [CytoView hg19]  ZNF678 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIZNF678 [Mapview hg19]  ZNF678 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB074269 AI655010 AK026475 AK307248 AK311313
RefSeq transcript (Entrez)NM_032755 NM_178549
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF678
Cluster EST : UnigeneHs.30323 [ NCBI ]
CGAP (NCI)Hs.30323
Gene ExpressionZNF678 [ NCBI-GEO ]   ZNF678 [ EBI - ARRAY_EXPRESS ]   ZNF678 [ SEEK ]   ZNF678 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF678 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339500
GTEX Portal (Tissue expression)ZNF678
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SXM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SXM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SXM1
Splice isoforms : SwissVarQ5SXM1
PhosPhoSitePlusQ5SXM1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF678
DMDM Disease mutations339500
Blocks (Seattle)ZNF678
SuperfamilyQ5SXM1
Peptide AtlasQ5SXM1
HPRD14622
IPIIPI01016001   IPI00217098   
Protein Interaction databases
DIP (DOE-UCLA)Q5SXM1
IntAct (EBI)Q5SXM1
BioGRIDZNF678
STRING (EMBL)ZNF678
ZODIACZNF678
Ontologies - Pathways
QuickGOQ5SXM1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF678
Atlas of Cancer Signalling NetworkZNF678
Wikipedia pathwaysZNF678
Orthology - Evolution
OrthoDB339500
Phylogenetic Trees/Animal Genes : TreeFamZNF678
HOVERGENQ5SXM1
HOGENOMQ5SXM1
Homologs : HomoloGeneZNF678
Homology/Alignments : Family Browser (UCSC)ZNF678
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF678 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF678
dbVarZNF678
ClinVarZNF678
1000_GenomesZNF678 
Exome Variant ServerZNF678
ExAC (Exome Aggregation Consortium)ZNF678 (select the gene name)
Genetic variants : HAPMAP339500
Genomic Variants (DGV)ZNF678 [DGVbeta]
DECIPHERZNF678 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF678 
Mutations
ICGC Data PortalZNF678 
TCGA Data PortalZNF678 
Broad Tumor PortalZNF678
OASIS PortalZNF678 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF678  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF678
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF678
DgiDB (Drug Gene Interaction Database)ZNF678
DoCM (Curated mutations)ZNF678 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF678 (select a term)
intoGenZNF678
Cancer3DZNF678(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF678
Genetic Testing Registry ZNF678
NextProtQ5SXM1 [Medical]
TSGene339500
GENETestsZNF678
Target ValidationZNF678
Huge Navigator ZNF678 [HugePedia]
snp3D : Map Gene to Disease339500
BioCentury BCIQZNF678
ClinGenZNF678
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339500
Chemical/Pharm GKB GenePA142670479
Clinical trialZNF678
Miscellaneous
canSAR (ICR)ZNF678 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF678
EVEXZNF678
GoPubMedZNF678
iHOPZNF678
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:51:02 CEST 2017

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